Lysinibacillus sp. SGAir0095: C1N55_17785
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Entry
C1N55_17785 CDS
T06028
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lyg
Lysinibacillus sp. SGAir0095
Pathway
lyg03030
DNA replication
lyg03410
Base excision repair
lyg03420
Nucleotide excision repair
lyg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C1N55_17785 (ligA)
03410 Base excision repair
C1N55_17785 (ligA)
03420 Nucleotide excision repair
C1N55_17785 (ligA)
03430 Mismatch repair
C1N55_17785 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lyg03032
]
C1N55_17785 (ligA)
03400 DNA repair and recombination proteins [BR:
lyg03400
]
C1N55_17785 (ligA)
Enzymes [BR:
lyg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C1N55_17785 (ligA)
DNA replication proteins [BR:
lyg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C1N55_17785 (ligA)
DNA repair and recombination proteins [BR:
lyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C1N55_17785 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C1N55_17785 (ligA)
MMR (mismatch excision repair)
DNA ligase
C1N55_17785 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C1N55_17785 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_pol_A_CTD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QCR33873
UniProt:
A0A4V1FFT0
LinkDB
All DBs
Position
complement(3599464..3601464)
Genome browser
AA seq
666 aa
AA seq
DB search
MNEIEKRVAELNKLLHEYGHAYYVLDKPLVPDAVYDQFLHELIALEKENPSLIYPDSPTG
RVGGTPLQGFKKVTHTYPMLSLSNAFGEEDLRDFDRKIRQAIGNDFSYVCELKIDGLAIA
LRYENGVFVQGATRGDGTVGEDITANLRTIRAIPLRLKEPVTIEVRGEAYMPKNSFAALN
KARSEKGEELFANPRNAAAGSLRQLDPKIAASRNLSTFIYSIGGDGEAYGIDSHAEMLDY
LETLGFPSNKEREFCETIEDVLAFINKWTENRLNLAYEIDGIVVKVNRYAHQDELGFTAK
SPRWAIAYKFPAEEVITTITGIELTVGRTGVITPTAILTPVQVAGTTVGRASLHNEDLIR
EKDIRIGDTVIIHKAGDIIPEVVGVILEQRPEDSIPFEMPTNCIACGDDLVRIEGEVALR
CVNPKCPAQIAEGIKHFVSRNAMNIDGLGEKVVEQLLRAEYIRDVADLYHLEKEQLVKLE
RMGEKSATNLVDAIENSKENSVERLLFGLGIRHVGAKAAKLLAEQFESMDALMLAKEEDI
TAVHEIGDKMADSIVTYFANDEVKELIERLKAVGVNMIYKGKKIQVEAGENPFAGKTIVL
TGKLSQLTRNEAKAKIEELGGSVTGSVSKKTDLVIAGEDAGSKLTKATELGIEVWDENRL
VEQLQQ
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaatcgaaaaacgagttgccgagctaaataaactacttcatgagtatgggcat
gcatactatgtgttggacaagccacttgtgccagatgctgtctatgatcagtttttacat
gaattaatcgctcttgaaaaagagaatccatcattaatatatcctgattctcctacagga
cgagttggtggcactccgcttcaaggatttaaaaaggtaacccatacgtatccgatgcta
agtttatcgaatgcttttggtgaagaggatttaagggactttgacagaaaaattcgccaa
gcaatcgggaatgacttttcttatgtttgtgaactgaaaattgatgggctcgctattgcg
ttacgctatgaaaatggtgtgtttgtacagggtgctacacgtggggatgggacagttggt
gaggatattaccgcgaatttgagaacaatccgcgctattcctcttcgattaaaggaacct
gtaacaattgaagttcgtggtgaagcctatatgcctaaaaattcctttgcagccttaaat
aaagcgcgtagcgaaaaaggtgaagagctattcgccaacccgcgtaacgcggcggctggt
tcactccgtcaactagatccgaaaatcgccgcaagccgtaatctttccacatttatttac
tctattggcggtgatggcgaagcctacggaatcgattcgcatgcagaaatgctggattat
ctagagacattaggtttcccatcaaataaagagcgtgagttttgtgaaacaattgaagac
gtactggcgtttataaataagtggactgaaaatcgcctaaatcttgcctatgagattgac
gggattgtagtaaaagtgaatcgctatgctcatcaagatgaactaggatttacagcaaaa
agtcctcgttgggcaattgcttacaaatttccagctgaagaggttattacaacaatcaca
ggaattgagcttacagtaggccgtacaggggtcattacaccgacagctattttaactcct
gtacaagtagctggaacaactgtgggaagagcatctcttcacaacgaagacttaattcgg
gaaaaggatatccgaattggagatacagtcattattcataaagcaggcgatattatcccg
gaagttgttggtgtcattctggaacaaagaccagaggattccatcccatttgaaatgccg
acaaactgtattgcatgtggagatgatttagttcgtattgaaggagaagtagcgttacgc
tgtgtaaaccctaaatgtcctgcccaaatcgcagaaggaattaagcactttgtctctcgt
aatgcgatgaatattgatggccttggcgaaaaggtagttgaacaactcctacgtgcagaa
tatattcgggatgttgcagacctttatcatctagaaaaagaacaactggtaaagcttgaa
cgtatgggtgagaaatccgctacaaatctggtagatgccatcgaaaattcaaaggaaaac
tcagttgagcgactactatttggcttaggaattcgtcatgtaggtgcaaaggcagcgaaa
cttttggcagaacaatttgaatcgatggatgccctaatgcttgcaaaagaggaagacatt
acggctgttcatgaaattggcgataaaatggcggattcgatcgttacttactttgctaat
gatgaagtgaaagagttgattgagcgactgaaagcagttggtgtcaacatgatttataaa
gggaaaaaaatacaggttgaagccggagaaaatccatttgcaggtaagacaattgtatta
acaggtaaattatctcaattgacacgtaatgaagcaaaggcgaaaatagaagagttgggc
ggaagtgtaacaggtagtgttagtaaaaagacagacctggtaattgcaggcgaagatgct
ggctcgaagcttacaaaagccacagaactaggcattgaagtttgggacgaaaaccgccta
gtagaacaattacaacagtaa
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