Lysinibacter sp. HNR: FrondiHNR_05885
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Entry
FrondiHNR_05885 CDS
T09375
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lyh
Lysinibacter sp. HNR
Pathway
lyh03030
DNA replication
lyh03410
Base excision repair
lyh03420
Nucleotide excision repair
lyh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lyh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FrondiHNR_05885 (ligA)
03410 Base excision repair
FrondiHNR_05885 (ligA)
03420 Nucleotide excision repair
FrondiHNR_05885 (ligA)
03430 Mismatch repair
FrondiHNR_05885 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lyh03032
]
FrondiHNR_05885 (ligA)
03400 DNA repair and recombination proteins [BR:
lyh03400
]
FrondiHNR_05885 (ligA)
Enzymes [BR:
lyh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FrondiHNR_05885 (ligA)
DNA replication proteins [BR:
lyh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FrondiHNR_05885 (ligA)
DNA repair and recombination proteins [BR:
lyh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FrondiHNR_05885 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FrondiHNR_05885 (ligA)
MMR (mismatch excision repair)
DNA ligase
FrondiHNR_05885 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FrondiHNR_05885 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WGD38612
LinkDB
All DBs
Position
1330050..1332311
Genome browser
AA seq
753 aa
AA seq
DB search
MNRPGFAEARVEWNELADRIRGLQSAYYERDESLVSDVEYDGLMHRLEEVERLFPELAAH
DSPTRRVGGGVSELFAPVVHAQRMYSLDNVFSIDEFRSWVERVSRDLEHVPTFLCELKID
GLALNLRYEQGVLVSAATRGDGVTGEDVTANVRFIPGIPQRLRGGGHPPLVEVRGEIFFP
IAAFADLNARREALGEKVFANPRNAASGSLRQKSEGKSAERLALMREGFEKLRLVVHGIG
AWENPPVTSQSDTYKLLADWGLPTSPYARVVNSADAAVSFIESFATKPESVIHEIDGTVV
KVDDLKQQSLLGSTSRAPRWAIAYKYPPEQVNTKLLDIRVGIGRTGRATPYAVVEPVFVS
GSTVSQATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVIELRNGSEHAFVMPLECP
ECGTPLRAMKEGDIDLRCPNARSCPAQVRGRVEHIGSRGGLDIEMLGEVGALALTQPLYP
ERAPLADASGMVGEAGLFDLRIQDIFPVVVVVRDMETGLPKLNDDGSQRAITPFRRRRDP
KKDGELVAENSVFSGDADSVPSANAIKLIENLELAKTKPFWRVLVSLNIRHVGPVAARAL
SEWFGSLDAIRAASHEELAQVEGVGDTIAESLIEWFSVDWHQEIVRRWADAGVLFSVPGH
PGPGALQVEGGVLSGLTVVATGTLEGFTRDGAKEAIIAAGGKAASSVSKKTDYVAAGPGA
GSKLARAEELGIPVLNAAQFAILVSEGPSALEG
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
ctgaaccgccccggttttgccgaggcgcgagtcgagtggaacgagctggccgatcgtatt
cgagggctacaatcggcctactatgagcgagacgaatccctcgtgtccgatgtggagtat
gacgggctcatgcatcggcttgaggaggtcgagcgactctttcccgagctcgcggctcat
gatagccccacccgccgggtgggagggggagtgagcgagctctttgctcccgtggttcac
gcccagcgcatgtatagtctcgacaatgtcttttcgatcgatgagtttcgatcctgggtg
gaacgagtgtcccgcgatctagagcatgtgcccacttttctctgtgaactaaagattgat
ggactggcgcttaatctgcgttatgaacagggcgttctggtgagcgcggcaacccgtggc
gacggtgtcacgggggaggacgtcacagcaaacgttcgttttatcccgggaattccgcag
aggctgcgtggcggggggcatccgccgctcgtggaggttcgtggagaaatattcttcccc
atcgccgcctttgccgatctcaacgcgcgtcgtgaggcactgggtgagaaggtttttgcc
aatccccgtaatgcggcaagcggctccctcagacagaaaagcgaaggaaaatccgcggag
cgcctggccctgatgagggagggctttgagaaactgcgcctcgtggtgcacggaattggt
gcctgggagaaccccccggtcacctctcaatccgatacgtataagctgttggccgactgg
gggctgcccacatccccttacgctcgggtggtcaacagcgctgacgccgcggtttccttc
atcgaaagttttgccaccaagcctgagagcgtcatccacgaaatcgatggaaccgttgtg
aaggtcgatgatctgaaacagcagagcctgctcggttcgacaagccgcgctccacgctgg
gcaatcgcctacaagtatccgccggaacaggtcaacaccaagctgcttgacattcgggtg
ggaatcggacgcaccggacgggcaaccccctacgccgttgttgagccggtttttgtctcg
ggctcaaccgtcagccaggcaacccttcacaatcaagaggttgttaaggcaaagggtgtg
ctgatcggcgacactgttgtccttcgtaaagcgggagacgttatccccgaaattttgggt
ccggttattgaacttcgcaacggtagcgaacacgcttttgtgatgccgctggagtgtccg
gagtgcggcacacctctccgggcgatgaaggagggggatatcgacctgcgctgtcccaac
gctcgtagctgccctgcccaggttcgtgggcgggttgagcacatcggatcccgcggcggc
ctcgacattgagatgcttggcgaagttggagctttggccctgacccagcccctttacccc
gaacgagctccgctcgcggatgcctccggcatggtgggtgaggcggggctttttgacctc
cgtatccaggatattttcccggttgttgtggtcgtacgggacatggaaaccggattacct
aagcttaatgatgatggctctcagcgtgcgattactccgttccgccgtcgccgtgatccc
aaaaaagacggcgagcttgttgcagagaattctgtcttttctggagacgcagattcggtt
ccctctgccaacgcaattaagctgattgagaatcttgagctcgctaagacaaagccgttc
tggcgggtgctggtttctctgaatattcgacatgtggggccggtagctgcccgtgcactg
agcgagtggtttggttcgctagatgcgatccgtgctgcgagtcacgaggagcttgcccag
gttgagggcgtaggggacaccatcgctgaatcgctcattgagtggtttagtgtcgactgg
caccaggaaatcgttcgcagatgggccgatgcgggggttcttttttccgttccagggcat
ccggggccgggtgcgcttcaggttgagggcggagttctatccgggttaaccgttgttgcc
acgggaacgctggagggctttactcgtgacggcgctaaagaggcaatcattgctgcgggt
ggtaaggccgcgtcgagcgtgtcaaagaaaaccgactacgtcgcggcgggacccggtgcc
gggtcaaaactggctcgagcggaagaactgggtatccccgttctgaacgccgcccaattt
gccattttggtgtcggaggggccttccgctcttgaggggtag
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