Lysinibacillus sp. OF-1: NV349_20065
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Entry
NV349_20065 CDS
T10748
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lyo Lysinibacillus sp. OF-1
Pathway
lyo03030
DNA replication
lyo03410
Base excision repair
lyo03420
Nucleotide excision repair
lyo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lyo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NV349_20065 (ligA)
03410 Base excision repair
NV349_20065 (ligA)
03420 Nucleotide excision repair
NV349_20065 (ligA)
03430 Mismatch repair
NV349_20065 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lyo03032
]
NV349_20065 (ligA)
03400 DNA repair and recombination proteins [BR:
lyo03400
]
NV349_20065 (ligA)
Enzymes [BR:
lyo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NV349_20065 (ligA)
DNA replication proteins [BR:
lyo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NV349_20065 (ligA)
DNA repair and recombination proteins [BR:
lyo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NV349_20065 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NV349_20065 (ligA)
MMR (mismatch excision repair)
DNA ligase
NV349_20065 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NV349_20065 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
WCH47289
LinkDB
All DBs
Position
complement(4086000..4088003)
Genome browser
AA seq
667 aa
AA seq
DB search
MNEIEQRVAELNKILHEYGHAYYVLDNPVVADSVYDQLLHELIALEEANPSLIYPDSPTQ
RVGGAVVEGFKKVTHDYPMLSLSNAFNEADLREFDRKVRQAIGDQFSYVCELKIDGLAIS
LKYENGVFVQGATRGDGVVGEDITANLKTIRAIPLRLKDPVTIEVRGEAYMPKKSFEKLN
THRADNGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGELYGIDGHAEMLDY
LEGLGFPSNKERQRCSTVEEVMAFIEHWTENRPNLAYEIDGIVIKVDRYAQQDELGYTAK
SPRWAIAYKFPAEEVVTTLLTIDLTVGRTGVVTPTAILTPVQVAGTTVQRASLHNEDLIR
EKDIRLGDTVIIRKAGDIIPQVVGVLIEQRPEDSVPFVMPKNCPVCDSELIRIEGEVALR
CVNPACFAQIAESIKYFVSRNAMNIDGLGDKVVEQLLRADLIHDVSDLYHLTVEQLVELE
RMGEKSATNLVNAIQASKENSMERLLIGLGIRHVGEKAAKIVSEQFGSMEAVMAATEEQL
VAIYEIGDKMASSLVEYFSNEDARAVIERLAEAGVNMTYKGKKVEVAKGDSPFAGKTIVL
TGKLEQLTRNEAKAKIEELGGTVTGSVSKKTDLVISGADAGSKLTKAEQLGIEVWNEDNL
IEQLNLI
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaatagaacagcgtgtagcggagttaaataaaatattgcatgaatatggtcac
gcctattatgtgttagataatcctgttgtagctgatagtgtatacgatcaattattacat
gaactgatcgcattagaggaagcgaatccatcactcatttatcccgattctcctacacag
cgtgttggtggagcagtggttgagggctttaaaaaagtaacacatgattatccaatgctt
agtctttcaaatgcttttaatgaagcagatttacgagagttcgatcgtaaagtacgtcag
gcaattggagaccaattttcttatgtatgtgagctgaaaatagatggtttggctatttca
ttgaaatatgaaaatggcgtgtttgtacaaggggcaacaagaggagatggtgttgtaggc
gaagatattacagccaatttaaagacaatccgagcgatcccactacgtttaaaagatcct
gtgacaatcgaagtacgtggtgaggcgtacatgccaaaaaaatcatttgaaaaattaaat
acgcaccgtgctgacaatggagaagaattatttgctaacccgcgtaatgcggctgctggc
tcactacgtcagttagacccaaaaattgcggcaagtcgtcaattatcaacttttatctat
gctattggtggagatggtgagttatatggtattgatgggcatgcggaaatgcttgattat
ttagagggtcttggtttcccttcgaacaaagagcgtcagcgttgctcgacagttgaagag
gtcatggcctttatagaacattggacagaaaaccgtccgaatttagcttacgaaattgat
ggtatcgttatcaaagtagatcggtatgctcaacaagatgagctaggctacaccgccaaa
agtccacgctgggccattgcctacaaatttccagcagaggaagttgtcacaacattactt
actattgatttaacagtaggacgtacaggtgtagtaacaccaacggctattttaacgcca
gtacaagtagcagggacgacggtacaacgtgcatcgttgcacaatgaagatttaattcga
gagaaggatattcgccttggagatacagtcattattcgaaaagctggtgatatcattcct
caagtggtaggtgtgctaatagagcaacgtccagaggactcagtcccttttgtcatgcca
aaaaattgccctgtttgtgatagtgaattgattcgtattgaaggtgaagtagctctacgc
tgtgtaaatcctgcctgctttgctcaaattgcggaaagcataaaatactttgtttcgcgc
aatgcgatgaatattgatggacttggagataaagtagtagagcaattattgcgtgcagat
ttaatacatgatgtatctgatttatatcatttaacagttgagcaacttgtagaactagaa
cgtatgggcgaaaaatctgcaaccaatttagtgaatgccattcaagcctcaaaggaaaac
tcaatggaacgtttattaataggtttaggtatacgtcatgttggtgaaaaggcagctaaa
atcgtatcagagcaatttggttcgatggaagcagtaatggcagcaacagaggaacagcta
gtagcgatttatgaaattggcgataaaatggcttcttcgttagtagagtatttctccaat
gaagatgcacgtgcagtcattgagcgtcttgctgaggcaggcgtgaatatgacgtataaa
ggtaaaaaagtagaagtggctaaaggtgatagtccctttgcaggtaaaacaattgtttta
actggtaaacttgagcaattgacacgcaacgaagcaaaggcgaaaatagaagagttaggt
ggtactgtcacaggcagtgtcagcaaaaaaacagaccttgtgatctcaggagcagatgca
ggctctaaactgacaaaggctgagcaattaggtatcgaagtttggaatgaagacaactta
attgaacaacttaacctcatctaa
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