Lysinibacillus sp. Ag94: MY533_19225
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Entry
MY533_19225 CDS
T10411
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lyq Lysinibacillus sp. Ag94
Pathway
lyq03030
DNA replication
lyq03410
Base excision repair
lyq03420
Nucleotide excision repair
lyq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lyq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MY533_19225 (ligA)
03410 Base excision repair
MY533_19225 (ligA)
03420 Nucleotide excision repair
MY533_19225 (ligA)
03430 Mismatch repair
MY533_19225 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lyq03032
]
MY533_19225 (ligA)
03400 DNA repair and recombination proteins [BR:
lyq03400
]
MY533_19225 (ligA)
Enzymes [BR:
lyq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MY533_19225 (ligA)
DNA replication proteins [BR:
lyq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MY533_19225 (ligA)
DNA repair and recombination proteins [BR:
lyq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MY533_19225 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MY533_19225 (ligA)
MMR (mismatch excision repair)
DNA ligase
MY533_19225 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MY533_19225 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_pol_A_CTD
Nlig-Ia
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UPW82818
LinkDB
All DBs
Position
complement(4073600..4075606)
Genome browser
AA seq
668 aa
AA seq
DB search
MNEIEQRVMELNKLLHEYGHAYYVLDKPIVADSVYDQLLHELIALEEANPSLIYPDSPTQ
RVGGAVVEGFKKVTHDYPMLSLSNAFNEEDLREFDRKVRQAIGDNFSYVCELKIDGLAIS
LKYENGVFVQGATRGDGVVGEDITANLKTIRAIPLRLKEPLTIEVRGEAYMPKKSFEKLN
TLRTENGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEAYGIDGHAEMLDY
LEGLGFPSNKERQRCSTIEEVLAFIEKWTDNRPNLAYEIDGIVIKVDRYAQQDELGYTAK
SPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILTPVQVAGTTVQRASLHNEDLIR
EKDIRLGDTVIIRKAGDIIPQVVGVILEQRPEDSVPYVMPEHCPVCDSELIRIEGEVALR
CVNPACFAQIAESIKYFVSRNAMNIDGLGDKVVEQLLRADLIHDISDLYHLTVEQLVELE
RMGEKSATNLVSAIQASKENSMERLLIGLGIRHVGEKAAKIVSEEFETMEAVMAATEEQL
VAIHEIGDKMASSLVEYFSNEDARAVIGRLAEVGVNMTYKGKKIEVAVGDNPFAGKTIVL
TGKLEQLTRNEAKAKIEELGGIVTGSVSKKTDLVIAGAEAGSKLAKAEQLGIKVWNEDSL
IEQLNLVQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaattgaacagcgcgttatggagttaaataaattattacacgaatacggtcat
gcctattacgtgttggataaacctatcgtagcagatagtgtttatgaccaattattgcat
gagcttattgcattagaggaagcgaatccgtcacttatttacccagattcacctacgcag
cgtgttggcggagcagtggtagaaggctttaagaaggtgactcacgattatccgatgcta
agtctatcaaacgcttttaatgaagaagatttacgtgaatttgaccgtaaagtacgtcaa
gcaatcggtgataacttttcctatgtttgtgagttgaaaattgatggtcttgccatttca
ttaaaatacgaaaatggcgtttttgtacaaggagcaacgcgaggagatggtgttgtaggg
gaagatattacagcaaatttaaaaacaattcgagcaatacctcttcgattgaaggagcca
cttacaattgaagtacgtggcgaggcgtatatgcctaaaaaatcatttgaaaaattgaat
acccttcgtactgagaatggagaagaactatttgctaatccgagaaatgcggctgctggt
tctttacgccagttagatcctaaaatagcagcgagtcgtcagctatcaacctttatttat
gcaattgggggagatggcgaggcatatggtattgacggtcatgcagagatgctcgattat
ttagagggactaggcttcccgtcaaacaaagagcgtcaacgctgctcaacgattgaagaa
gtactagcctttatcgaaaaatggactgataaccgtccgaatttagcctatgaaattgac
ggtattgttattaaggtagatcgctatgcgcaacaggatgagcttggttatacagcaaag
agtccacgttgggcaattgcctataaattccctgctgaggaagtagtgacaacattactt
gatattgatttaacggttgggcgtacaggtgttgttacaccaactgctattttaacgcct
gttcaagtggcaggtacgacagttcaacgtgcgtccttacacaatgaggatttaattcga
gagaaagatattcgactaggagatactgtcattatccgaaaagccggagatattattcct
caagttgtaggtgtaatactggagcagcgccctgaggactcagtgccatatgtaatgcct
gaacattgtccagtttgtgatagcgagcttattcgtattgaaggagaagtggcattacgt
tgtgtaaatccagcatgctttgcacaaattgcggagagcattaaatatttcgtatcgcgt
aatgctatgaatattgacggtcttggtgataaagtcgttgagcaattattacgtgcagat
ttaattcatgatatctctgatttgtatcacttaactgtagaacagcttgttgagcttgag
cgtatgggagaaaaatcagcgacgaatttagtcagtgctattcaggcttctaaagaaaat
tcgatggagcgtttactaattggattagggatacgacatgttggtgaaaaagcagcaaaa
attgtttcagaggagtttgaaacgatggaagcggtgatggcagcaacagaggagcaacta
gtggcgattcatgaaatcggcgataaaatggcttcatcgctagtcgagtatttttcaaat
gaggatgctcgtgcagtcattgggcgccttgctgaagtaggcgtcaatatgacgtataaa
ggtaaaaaaatagaagtagctgtaggggataatccttttgcaggtaaaacaatcgtatta
actggtaaacttgagcaattgacacgtaacgaagcaaaggcgaaaatagaagagttaggt
ggtattgttacaggtagtgtcagcaaaaaaactgaccttgtcattgcaggagcagaggcg
ggttctaaactagcaaaagccgagcaattaggtattaaagtttggaatgaagacagcctg
atcgaacaacttaacctcgtccaataa
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