Lysinibacillus sp. RS11: AB9L17_21950
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Entry
AB9L17_21950 CDS
T11529
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lyr Lysinibacillus sp. RS11
Pathway
lyr03030
DNA replication
lyr03410
Base excision repair
lyr03420
Nucleotide excision repair
lyr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB9L17_21950 (ligA)
03410 Base excision repair
AB9L17_21950 (ligA)
03420 Nucleotide excision repair
AB9L17_21950 (ligA)
03430 Mismatch repair
AB9L17_21950 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lyr03032
]
AB9L17_21950 (ligA)
03400 DNA repair and recombination proteins [BR:
lyr03400
]
AB9L17_21950 (ligA)
Enzymes [BR:
lyr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AB9L17_21950 (ligA)
DNA replication proteins [BR:
lyr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AB9L17_21950 (ligA)
DNA repair and recombination proteins [BR:
lyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AB9L17_21950 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AB9L17_21950 (ligA)
MMR (mismatch excision repair)
DNA ligase
AB9L17_21950 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AB9L17_21950 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_pol_A_CTD
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
XGY94420
LinkDB
All DBs
Position
complement(4235338..4237344)
Genome browser
AA seq
668 aa
AA seq
DB search
MNEIEQRIAELNKLLHEYGHAYYVLDKPVVADSVYDQLLHELLALEEANPSLIYPDSPTQ
RVGGAVVEGFKKVTHDYPMLSLSNAFNEEDLREFDRKVRQAIGDNFSYVCELKIDGLAIS
LKYENGVFVQGATRGDGVVGEEITTNLKTIRAIPLRLKEPITIEVRGEAYMPKKSFEKLN
AQRTENGEELFANPRNAAAGSLRQLDPKIAASRQLSTFIYAIGGDGEAYGIDGHAEMLDY
LEGLGCPSNKERQRCSTIEEVLAFIEEWTENRPNLAYEIDGIVIKVDRYAQQDELGYTAK
SPRWAIAYKFPAEEVVTTLLDIDLTVGRTGVVTPTAILAPVQVAGTTVQRASLHNEDLIR
DKDIRLGDTVIIRKAGDIIPQVVGVLVEQRPEDSVPFVMPKNCPVCDSELIRIEGEVALR
CVNPACFAQIAESIKYFVSRNAMNIDGLGDKVVEQLLRADLIHDVSDLYHLTVEQLVELE
RMGEKSATNLVNAIQASKENSMERLLIGLGIRHVGEKAAKIVSEEFETMEAVMTATEEQL
VAIHEIGDKMASSLVEYFSNEDARAVIGRLAEVGVNMTYKGKKIEVAVGDNPFAGKTIVL
TGKLEQLTRNEAKAKIEELGGIVTGSVSKKTDLVIAGAEAGSKLTKAEQLGIEVWNEDSL
IEQLNLVQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaatagaacagcgcattgcggagttaaataaattgttacatgaatatggccat
gcctattacgtgttggataaacctgtcgtagcagatagtgtttatgaccaattattacat
gaacttcttgcattagaggaagcaaatccgtcactaatttatccggattcaccgacacag
cgtgttggaggagcagtggtagaaggctttaaaaaagtgacacacgattatcctatgcta
agtctatcaaatgcttttaatgaagaagacttgcgtgaatttgaccgtaaagtgcgtcaa
gcaatcggtgataacttttcctatgtttgtgagctgaaaattgatggtcttgccatttct
ctgaaatacgaaaatggagtttttgtacaaggggcaacgcgaggagacggtgttgtaggg
gaagagattacaacaaacttaaaaacgattcgggcaataccacttcgattgaaggagcct
atcacaattgaagttcgtggtgaagcgtatatgcctaaaaaatcatttgaaaaattaaat
gctcagcgtactgaaaatggtgaggagttatttgccaatccgcgtaatgcagctgctggc
tctttacgtcagttagatcctaaaatagcagcgagtcgtcagctatcaacctttatttat
gcgattgggggagatggagaggcatatggtattgacggtcatgcagagatgctcgattat
ttagagggactaggctgcccgtcaaataaagagcgtcaacgctgttcaacgattgaggag
gtactagcctttatcgaagaatggactgaaaatcgtccgaatttagcctatgaaattgac
ggcattgtcattaaggtagaccgctacgcacagcaggatgaacttggttatacggcaaag
agtccacgatgggcaattgcctataaattccctgctgaggaagtagtcacaacattactt
gatattgatttaacagttggacgtacaggggttgttacacctactgccattttagcgcct
gttcaagttgcaggtacaacggttcaacgcgcttcgttacacaatgaggatttaattcga
gataaggatattcgcttaggtgatacagtcataatccgaaaagctggcgacattattcca
caagttgtaggtgtgttagtagagcaacgacctgaggattcagttccattcgtcatgcct
aaaaactgtcctgtctgtgatagtgagcttattcgtattgaaggtgaagtagcattacgt
tgtgtaaatcctgcatgttttgcacaaattgcggagagcattaaatactttgtttcacgt
aatgctatgaatattgatggtcttggggataaggtcgttgagcaattattacgtgcagat
ttaattcatgatgtctctgatttgtatcacttaacggtagagcagcttgttgagcttgag
cgaatgggtgaaaaatctgctacgaatttagtcaatgcgattcaggcttccaaggaaaat
tcgatggagcgtttactaattggactaggtatacgacatgttggggaaaaggcagcgaaa
attgtttccgaggaatttgaaacgatggaagcggttatgacagcaacagaggagcaactg
gtagcaatccacgaaattggagataagatggcttcatcgcttgtcgagtatttttcaaat
gaggatgcacgtgcagtcattggtcgccttgctgaagtgggcgtcaatatgacgtataaa
ggtaaaaagatagaggtagctgtaggagataatccttttgcaggtaaaacaatcgtatta
actggtaaacttgagcaattgacacgtaacgaagcaaaggcgaaaatagaagagttaggt
ggtattgttacaggtagtgtcagcaaaaaaactgaccttgttattgcaggagcagaagca
ggttctaaactaacaaaagccgagcagttaggtattgaagtttggaatgaagacagcctg
attgaacaacttaacctcgtacaataa
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