Lysobacter sp. CW239: H2514_07715
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Entry
H2514_07715 CDS
T10688
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lyw Lysobacter sp. CW239
Pathway
lyw03030
DNA replication
lyw03410
Base excision repair
lyw03420
Nucleotide excision repair
lyw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lyw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H2514_07715 (ligA)
03410 Base excision repair
H2514_07715 (ligA)
03420 Nucleotide excision repair
H2514_07715 (ligA)
03430 Mismatch repair
H2514_07715 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lyw03032
]
H2514_07715 (ligA)
03400 DNA repair and recombination proteins [BR:
lyw03400
]
H2514_07715 (ligA)
Enzymes [BR:
lyw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H2514_07715 (ligA)
DNA replication proteins [BR:
lyw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H2514_07715 (ligA)
DNA repair and recombination proteins [BR:
lyw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H2514_07715 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H2514_07715 (ligA)
MMR (mismatch excision repair)
DNA ligase
H2514_07715 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H2514_07715 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
QOD90136
LinkDB
All DBs
Position
complement(1761254..1763602)
Genome browser
AA seq
782 aa
AA seq
DB search
MPATTDPATRIAALRRQLDDANYRYHVLDDAEIPDAEYDRLLRELEQLEAAHPELASADS
PTRRVGAAPSGAFATVVHALPMLSLGNAFAEDEVADFVRRIEQNLGRKDPLFSVEPKLDG
LAISLRYEHGRFVQGATRGDGASGEDVTANLRTIRAIPLQLRGTGWPGVLEVRGEVYMPL
AGFKRYNERMLAEGGKVLANPRNGAAGSLRQLDPRITARRPLAFYAYAVGMVEDGALPDT
HSATLRQLRGWGFPVSAESRVVSGVDGLLDYYRRIGERRDHLPFDIDGVVYKLDDYAGQR
EMGFVSRAPRWAIAHKFPAQEQSTVLEAIEVQIGRTGAVTPVARLQPVQVAGVVVTNATL
HNADQIARLDVRVGDTVIVRRAGDVIPEIVRVVPGLRAPDAVAWAMPTHCPVCGSEILRE
EGGVVWRCSGELTCAAQRKEAIGHFASRRAMDIDGLGERYIEDLSDFDYVTSVADLYKLT
LDDLLEMKRRGDERAGTIPETVKSGKVATRWAENLIEAIDRSRRTTLERFLFGLGIQRVG
ESTAKALAHWFGDLELIRHLPWPLFKRVPDIGAEVARSIGHFFDQPGNQQVIDQLLARGV
TIGDAHPPSPKLRDGLTLAALLVDLEIPRLTRLRAEQLAAVFPDATALQDAPHHHFISAG
LPADTASALAAWLEDADNAKLLTQCGDALARLDALVPAVDAVAVGPLEGKTVVLTGTLSA
MTRDEAKARLEALGAKSAGSVSKKTSFVVAGEAAGSKLAKAEELGVEVWDEARLLAFLTE
HE
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgcctgccacgaccgatcccgccacccgcattgccgcgctgcgccgccagctcgacgac
gccaactaccgctatcacgtgctcgacgacgccgagattccggatgcggagtacgaccgg
ctgttgcgtgaactcgagcagttggaggccgcgcatcccgagctcgccagtgccgattcg
ccgacccggcgcgtcggtgccgcgccgtcgggcgccttcgccaccgtcgtgcatgcgctg
ccgatgctgtcactgggcaatgcgttcgccgaggacgaggtcgccgacttcgtgcgccgg
atcgagcagaacctcggccgcaaggatccgctgttctcggtcgaacccaagctcgacggg
ctggcgatcagcctgcgttacgagcacggccgtttcgtccagggcgcgacccgcggcgac
ggtgccagcggcgaggacgtcaccgccaatctgcgcacgatcagggcgatcccgttgcaa
ctgcgcggtacgggctggcccggggtgctggaagtgcgcggcgaggtctacatgccgttg
gcggggttcaagcgctacaacgagcggatgctggccgagggcggcaaggtcctggccaat
ccacgcaacggtgcggccgggtcgctgcgccagctcgatccgcgcatcaccgcgcgtcgg
ccgctggcgttctatgcgtacgcggtcggcatggtcgaggacggcgcgttgcccgacacc
cattcggcgacattgcggcaactgcgcgggtggggcttcccggtcagcgccgaaagccgc
gtggtgagcggtgtcgacggtctgctggattactaccggcgcatcggcgagcgccgcgac
cacctgccattcgacatcgacggcgtggtctacaagctcgacgactatgccggccagcgc
gagatgggcttcgtctcgcgtgcgccgcgctgggcgatcgcgcacaagtttccggcgcag
gagcagtcgaccgtgctggaggcgatcgaggtccagatcgggcggaccggcgcggtgacg
ccggtcgcgcgcctgcaaccggtccaggtggccggggttgtggtcaccaacgcgaccctg
cacaacgcggaccagatcgcccggctggacgtgcgcgtcggcgacaccgtgattgtgcgc
cgtgccggtgacgtgattccggagatcgtccgcgtcgtgccgggcctgcgcgcaccggac
gccgtcgcctgggcgatgccgacgcactgcccggtatgcggttcggaaatcctgcgcgag
gaaggcggggtggtatggcgctgttcgggcgagctgacctgcgcggcacagcgcaaggag
gccatcggccacttcgcctcgcggcgggcaatggacatcgacggcctgggcgagcgctac
atcgaggatctgtcggacttcgactacgtcacctcggtggcggacctgtacaaactgacc
ctcgacgacctgctggagatgaagcgtcgtggcgacgaacgggctggcaccatcccggaa
acggtgaagtcgggcaaggtcgcgacccgctgggccgagaacctgatcgaggcgatcgac
cgcagccgccgcacgacgctggagcgcttcctgttcgggctcgggatccagcgcgtcggc
gagagcaccgcgaaggcgctggcgcactggtttggcgaccttgaactgatccgccacctg
ccgtggccgctgttcaaacgcgtgccggatatcggcgcggaagtggcccgttcgatcggc
catttcttcgaccagcccggcaaccagcaggtcatcgaccagctgctggcgcgcggcgtg
acgatcggcgatgcgcacccgccatcgccgaagctgcgggacggcctgacgttggcggcg
ttgctggttgatctggaaatccccaggctcacccgcctgcgcgcggagcagctggccgcc
gtgtttcccgacgcaactgcgttgcaggatgcaccgcaccaccatttcatcagcgccggc
ctgccggccgatacggcgtccgcgctggccgcctggctggaggacgcggacaacgcgaag
ctgctgacgcagtgtggcgatgccctggcccggctggacgcactggttcctgctgtggat
gccgtggccgtcgggccgcttgagggcaagaccgtggtgttgacgggaaccctctcggcg
atgacccgcgatgaagccaaggcgcgcctggaagcattgggcgcgaagtccgccggcagc
gtgtcgaagaagaccagcttcgtggtggccggcgaagccgccggctccaagctcgccaag
gccgaagaacttggtgtcgaggtctgggatgaggcccggctgcttgcctttctgaccgaa
cacgaatga
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