KEGG   Lysinibacillus sp. 2017: DCE79_16395
Entry
DCE79_16395       CDS       T05455                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
lyz  Lysinibacillus sp. 2017
Pathway
lyz03030  DNA replication
lyz03410  Base excision repair
lyz03420  Nucleotide excision repair
lyz03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lyz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DCE79_16395 (ligA)
   03410 Base excision repair
    DCE79_16395 (ligA)
   03420 Nucleotide excision repair
    DCE79_16395 (ligA)
   03430 Mismatch repair
    DCE79_16395 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lyz03032]
    DCE79_16395 (ligA)
   03400 DNA repair and recombination proteins [BR:lyz03400]
    DCE79_16395 (ligA)
Enzymes [BR:lyz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DCE79_16395 (ligA)
DNA replication proteins [BR:lyz03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DCE79_16395 (ligA)
DNA repair and recombination proteins [BR:lyz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DCE79_16395 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DCE79_16395 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     DCE79_16395 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DCE79_16395 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD Nlig-Ia PTCB-BRCT HHH RNA_pol_A_CTD HHH_3 DUF3067 BRCT_2 DUF4043
Other DBs
NCBI-ProteinID: AWE08835
UniProt: A0A2S1H588
LinkDB
Position
complement(3345764..3347761)
AA seq 665 aa
MNEIEQRIAELNKLLHEYGYAYYVQDKPVVEDSVYDQLLHELIALEEENPAFIYPDSPTQ
RVGGAVLEGFQKVTHETAMLSLSNAFNEEELRDFDRKINQAIGDDYAYVCELKIDGLAIS
LKYENGVFIQGATRGDGKIGEDITMNLKTIRAIPLRLKEPLTIEVRGEAYMPKKSFNKLN
ERRAEKGEELFANPRNAAAGSLRQLDPKIAASRNLSTFIYAIGGDGESYGIDGHWEMLAY
LEQLGFPSNKEREYCETIEDVLAFIEKWTEARPNLAYEIDGIVIKVNRYAHQDELGFTAK
SPRWSIAYKFPAEEVVTKLIDIELTVGRTGVITPTAILTPVLVAGSTVSRASLHNEDLIR
EKDIRLNDTVIVRKAGDVIPQIVGVLLEQRPDDAVPYQMPTHCPACNEEVVRIESDVALR
CVNPLCPAQIAEGVKHFVSRNAMNIDGLGEKVVEQLLRENYIQDVSNLYELTVEMLVNLE
RMGEKSATNLVEALEKSKDNSLERLLFGLGIRHVGEKAAKILAEHFETMDAFMLATEEQL
KEIHEIGDKMAESIVAYFANEKSQILIQRLKDFGINMTYKGKKVVVEVGANPFAGKTIVL
TGKLQQLTRSEAKVKIEQLGGTVAGSVSKKTDLVIVGEDAGSKLEKAQSLGIEIWDELRL
IEQLL
NT seq 1998 nt   +upstreamnt  +downstreamnt
atgaatgaaatcgaacaaagaattgcagagttaaacaagcttctccatgagtatggttat
gcctattatgtgcaggataaaccggtagtagaagatagtgtgtatgaccaattattacac
gaattaatcgcattagaagaagagaatcctgcgtttatttatccggattctccaacgcag
cgtgtcggtggtgcggtgttagaaggcttccaaaaagtaacgcatgaaacggcgatgcta
agtctttcaaatgccttcaatgaagaagagttacgcgattttgaccgcaaaatcaaccaa
gctattggtgatgactatgcttatgtttgtgagttgaaaattgatggattggccatttct
ttaaagtatgaaaatggtgtcttcatacaaggtgcaacgcgtggggacggtaagattggt
gaagatattacgatgaacttaaaaacgattcgtgccattccacttcgtttaaaagaacca
ctaacaattgaagtacgcggcgaagcgtatatgccgaaaaaatcatttaataaattaaat
gaacgtcgtgctgaaaaaggggaagaactttttgcaaacccgcgtaatgcagcggcaggg
tcccttcgtcaattagatcctaaaattgcagcgagtcgtaatctatcgacatttatttat
gcaattggcggcgacggtgaatcgtacggtatcgatggtcattgggaaatgcttgcatat
ttagaacagctaggctttccatcaaataaagaacgtgagtattgtgaaacaattgaggac
gttttagcgtttatagagaagtggacagaagcaagaccaaatttagcttatgaaattgac
ggtatcgtcattaaagtaaaccgctatgctcatcaagatgaacttggttttactgcaaaa
tcacctcgatggtcaattgcctataagttcccagcagaagaagtggtaacgaagctcatc
gacattgaattaacagtcggtcgaacaggtgtcattacgccaactgccattttaacaccg
gtgctcgttgcggggtctactgtaagccgcgcatcgcttcataacgaagatttaattcgt
gaaaaggatattcgattaaacgatacggtcattgttcgtaaagcaggagatgtcatccca
caaatcgtcggtgtgttactagaacaacgcccagacgatgcagtaccttatcaaatgcca
acgcattgtccagcttgtaacgaagaggttgtccgtattgaaagtgatgttgctctgaga
tgtgtcaatcctctttgcccagcacaaattgcagaaggtgtgaagcactttgtatctcgt
aatgcgatgaatattgatggtttaggtgaaaaagtggtagagcaacttttacgcgaaaac
tacattcaagatgtttctaatctttatgaattaactgtagaaatgcttgttaatttagag
cgaatgggagaaaaatcggcgactaatttagttgaagcactagaaaaatcaaaagacaat
tccttagagcgcttattattcggattaggcattcgtcacgttggtgaaaaagctgcaaaa
attttagcggagcattttgaaaccatggatgcattcatgttagcaacggaagagcagcta
aaagaaattcatgaaattggagacaaaatggcagagtccatcgtcgcatattttgcgaat
gaaaaaagtcaaattctcatacaacgtctaaaagatttcggtattaatatgacctataaa
gggaaaaaagtggtagttgaagttggtgcgaatccgtttgctggaaaaacgattgtcctt
acaggaaaacttcaacaattgacacgtagcgaagcaaaggtcaaaatagaacagttaggt
ggtacggtagcgggaagtgtcagtaaaaaaacagacctcgttatcgtaggagaagatgcc
ggctcgaagcttgaaaaagcacaaagtttaggaattgaaatttgggatgaacttcgccta
atcgaacaattactatag

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