Companilactobacillus zhachilii: D1B17_09820
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Entry
D1B17_09820 CDS
T06807
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lzh
Companilactobacillus zhachilii
Pathway
lzh03030
DNA replication
lzh03410
Base excision repair
lzh03420
Nucleotide excision repair
lzh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lzh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D1B17_09820 (ligA)
03410 Base excision repair
D1B17_09820 (ligA)
03420 Nucleotide excision repair
D1B17_09820 (ligA)
03430 Mismatch repair
D1B17_09820 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lzh03032
]
D1B17_09820 (ligA)
03400 DNA repair and recombination proteins [BR:
lzh03400
]
D1B17_09820 (ligA)
Enzymes [BR:
lzh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D1B17_09820 (ligA)
DNA replication proteins [BR:
lzh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D1B17_09820 (ligA)
DNA repair and recombination proteins [BR:
lzh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D1B17_09820 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D1B17_09820 (ligA)
MMR (mismatch excision repair)
DNA ligase
D1B17_09820 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D1B17_09820 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
RTT107_BRCT_5
Mer2
Motif
Other DBs
NCBI-ProteinID:
AYE38914
UniProt:
A0A386PSF3
LinkDB
All DBs
Position
650984..653002
Genome browser
AA seq
672 aa
AA seq
DB search
MADLTKEQANEELAKIRPQLNEWRDAYYTKDAPVVEDNVYDKLYNRLLDIEQQYPELVTS
DSPSQQVGDVTLPDFNKVTHDIPMLSMGDVFSESELAEFNDRIEKNVGHEVDYNVELKID
GLSLSLIYENGILVQGSTRGNGTIGENVTENVKTIKDVPQKLSRPLSFEVRGECFMSKKE
FLRLNQERENEGQQVFANPRNAAAGSLRQLDPKVTASRKLDTFMYTIVTFDDLNVTTQHE
ALETLKELGFNVNPTAQVTTGLKGVQDFIEHYGELRDDLDYGIDGVVLKVDDLATQRSLG
NTVKVPRWEIAYKFPPEQAESVVHEITWTIGRTGVLTPTAVMDPVQLAGTTVSRATLHNE
DMIRQKDIRVGDTVLLHKAGDIIPEVSQVVLSKRPADSVPAEIPTHCPYCDSELIHLEDE
VALRCINPKCPAQVKEQLTHFASRNAMNIDGLGPKIIEQLYTKKLVQDVADIYKLTADDL
ETLDGFKEKSINNLLTAIDNSKSNSVERLIFGLGIRHVGAKAGRILAENFGSLDKLMSAS
TEEILEVNTMGEIIADSIVTYFANDDVQKLINELKSVNINMNFIGSSNSNETNSHFTDKI
IVITGTLQNYKRSQLAEMLENLGAKVTGSVTKKTDILIAGEKAGSKLTKAQQLGTQIIDE
ATLSDYLDDAKE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggcagatttaacaaaagaacaagctaatgaagagttagcgaagattcgtcctcaatta
aatgaatggcgtgatgcgtattatacaaaggatgctccagtcgtcgaagataatgtttat
gacaaactttataatcgattgttagacattgagcagcaatatcctgagttagtaacgtcc
gattcgccatcgcaacaagttggtgacgtgacattacctgattttaataaagttacccat
gatatcccgatgttatcaatgggggatgttttctctgaaagtgaactagccgaatttaat
gatcgaatcgaaaaaaatgttggacatgaagtagattataatgttgaattaaaaattgat
ggtttatcactatcacttatttatgaaaatggtatcttagttcaaggctcaactcgtggt
aacgggacaatcggtgagaatgtgaccgagaacgttaaaactatcaaagatgtccctcaa
aagttaagtcgtccattatcgtttgaagtccgtggcgagtgtttcatgtcaaagaaagaa
tttttacgtttgaatcaggaacgtgaaaatgaaggtcaacaagtttttgccaatcctaga
aatgcggctgccggtagtttgcgtcaacttgatcctaaagtgacagcttccagaaaactt
gatacctttatgtatacaattgttacttttgatgatttaaatgtcacaacgcaacatgaa
gctctagaaaccttgaaagagttaggttttaacgtcaatccaacagctcaagtaacgacc
ggtttaaaaggcgttcaagatttcatcgaacattatggtgaattacgtgatgatcttgat
tacggtattgatggggtcgtcttaaaagtcgatgatttagcaacccaaagaagtcttggt
aatactgtcaaagtacctcgttgggaaattgcttataagtttccaccagagcaggctgag
tcggttgtacatgaaattacttggacaattggtcggactggtgtcttaacaccaactgct
gtgatggacccagttcaattagctgggacgactgtttcacgagcaactttgcacaatgaa
gatatgattcgtcaaaaagatattcgagttggcgatactgttttgctgcataaggcaggc
gatattattcccgaagtttcgcaagtggttttgagtaaacgaccagcggattcagttccg
gctgagattcctacccattgtccatactgtgattcagagttgattcatttggaagatgaa
gtagctttacgttgtatcaatcccaagtgtccagctcaagtaaaagaacagttgacacat
tttgcttcacgtaatgcaatgaatattgatggcttaggtcctaaaattattgagcaatta
tatacgaaaaaattagttcaagatgtggctgatatttataagttaacggctgatgattta
gaaactttggacggctttaaagaaaaatcaattaacaacttattaacagcgattgataac
tccaagagtaactcggtggaacgtttgatttttggcctcggtattcgtcatgttggtgcc
aaagccggccggatcttggctgaaaattttggtagtctggataaattgatgtccgcttcc
acagaagaaatccttgaagtaaatacaatgggtgagataattgcagatagcattgtaact
tattttgctaatgatgatgttcaaaagctgattaatgaactaaaatcagtaaatattaat
atgaattttatcggtagttcgaattctaatgaaacaaatagtcactttactgataaaata
attgttataaccggaacattacaaaattataaacgttcacaattggcagagatgctagaa
aatctcggtgctaaggttactggatcagttacgaaaaagactgatattttgattgctggt
gaaaaggccggtagcaaattaactaaggcacaacaattgggaacacagattattgatgaa
gcaacattgtctgattatttagatgatgccaaagagtag
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