Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300: MMASJCM_3344
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Entry
MMASJCM_3344 CDS
T03694
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mabl
Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300
Pathway
mabl03030
DNA replication
mabl03410
Base excision repair
mabl03420
Nucleotide excision repair
mabl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mabl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MMASJCM_3344
03410 Base excision repair
MMASJCM_3344
03420 Nucleotide excision repair
MMASJCM_3344
03430 Mismatch repair
MMASJCM_3344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mabl03032
]
MMASJCM_3344
03400 DNA repair and recombination proteins [BR:
mabl03400
]
MMASJCM_3344
Enzymes [BR:
mabl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MMASJCM_3344
DNA replication proteins [BR:
mabl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MMASJCM_3344
DNA repair and recombination proteins [BR:
mabl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MMASJCM_3344
NER (nucleotide excision repair)
GGR (global genome repair) factors
MMASJCM_3344
MMR (mismatch excision repair)
DNA ligase
MMASJCM_3344
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MMASJCM_3344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BAP98120
LinkDB
All DBs
Position
complement(3351882..3353927)
Genome browser
AA seq
681 aa
AA seq
DB search
MDSDIQRQWGELAEEVRGHQFRYYVKDAPVISDGQFDELLRRLTALEEQYPELRTPDSPT
QLVGGAGFVTEFRSVDHLERMLSLDNAFSSDELTAWDARVRGDIGEEPEYLCELKIDGVA
LSLVYENGVLVRGATRGDGRSGEDVTLNARTIEDVPERLAKSEKYPIPALLEVRGEVFFR
LEDFEALNASLVEESKPPFANPRNSAAGSLRQKNPAITARRRLRMICHGLGRAEGFSPES
LHDAYLALGEWGLPVSTHTTKVRGIAKVQERVNYWAEHRHDVEHEIDGVVVKVDAVALQR
RLGSTSRAPRWAIAYKYPPEEATTELLDIRVSVGRTGRVTPFAYMTPVKVAGSTVSLATL
HNASEVKRKGVLIGDTVVIRKAGDVIPEVLGPVADLRNGNEREFVMPTACPECGTTLAHE
KEGDADIRCPNSRSCPAQLRERVFHVAGRGAFDIEALGYEAAIALLAAGVIEDEGDLFGL
TADDLLRTDLFKTKSGALSANGARLLDNLDKAKQQPLWRVLVALSIRHVGPTAARALATE
FGDLEAIEGASVEQLAAVEGVGATIAAAVVDWFTVDWHRAIVDKWRAAGVRTADERDDSI
PRNLEGLSIVVTGSLPGFSRDEAKEAIIARGGKSASSVSKKTAFVVVGDSPGSKYDKAVE
LGVTILDEDGFRALLADGPPA
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggattccgacatccagcgccaatggggcgagctggccgaagaggtgcgcggccatcag
ttccgctactacgtcaaggacgcccccgtcatttctgacggacagttcgacgagctgcta
cggcggctgaccgcgctggaagagcagtaccccgagctgcgcacaccggattcgccgacg
cagttggtcggcggcgcgggattcgtcaccgagttcagatcggtcgaccacctggagcgg
atgctgagcttggacaacgcattcagttccgatgaattgacggcctgggatgcccgggtg
cgtggcgatatcggtgaggagccggagtacctgtgcgagctgaagatcgacggtgtggcg
ctctcgctggtgtacgagaacggcgtgctggtgcgcggggccactcgtggggacgggcgt
agcggtgaggatgtcaccctgaacgcccggaccatcgaggacgtgccggaaaggcttgcg
aagtctgagaaatatccgatacccgcgctcctagaggtgcgcggtgaagtgttcttccgg
ctggaggatttcgaggcgctgaacgcgtctctcgtcgaggaaagcaaaccgccgttcgcg
aaccctcgtaacagtgccgcgggcagcctgcggcagaagaacccggcgatcacggccagg
cggcggctgcggatgatctgtcacggactcgggcgggccgaaggcttttcgccggagagc
ttgcatgatgcctacttggcactgggggagtggggattaccggtctcgacgcacaccacc
aaggtgcggggcattgccaaagtgcaggaacgtgtcaactactgggcggaacaccgccac
gacgtggaacacgagatcgacggtgtcgtcgtgaaggtcgacgcggttgcgctgcagcgc
cgcctcggcagtacctcgcgcgcaccacgctgggcaatcgcctacaagtacccgccggag
gaggcgacaactgaactgctcgacatccgggtgagcgtgggccgcaccggcagggtcacc
ccgttcgcgtacatgactccggtcaaggtagccggatccacggtgtcgttggcgaccctg
cacaatgcctccgaagtcaagcgcaagggtgtgctgatcggcgacacggtcgtgattcgc
aaggccggcgacgtgattcccgaggtgctgggtccggttgccgatctgagaaatggcaat
gagcgcgaattcgtcatgcccacagcgtgtcccgaatgcggtaccacactggcccacgag
aaggagggcgatgccgacatccgttgccccaactcgcgtagctgtcctgcgcaactgcgg
gagcgggtgttccatgtggcgggacgcggcgccttcgatatcgaagccctcggctatgag
gcggcgatagcgctgctcgcggccggcgtgatcgaggatgagggggatctgttcggcctc
accgccgatgacctgctgcgcaccgatctgttcaagaccaagagcggtgctctgtccgcc
aacggagcccggctgttggacaacctcgacaaggcgaagcaacagccgttgtggcgggtg
ctggtggcgctttcgatccgccatgtcggccccaccgcggcccgcgcgttggccaccgaa
ttcggcgatctggaagccatcgagggagcctccgtcgaacagttggcggcggtcgagggg
gtaggggcgacaatcgcagcggccgtggtggactggttcaccgtcgactggcatcgcgcc
atcgtcgacaagtggcgcgccgcgggcgtgcggactgccgatgagcgtgacgactccata
ccgcgcaacctggaagggttgtccatcgtcgtaaccggttcgctcccaggcttttcgcgc
gatgaggccaaggaggccatcatcgcccggggcggcaagtccgcgagttcggtgtccaag
aagacggcattcgtggttgtcggagattcgccgggatccaagtatgacaaggccgtcgag
ctcggggtgaccatcctcgacgaggatggattccgggccttgctggccgacgggccgccc
gcgtag
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integrated database retrieval system
