Marinobacter sp. CA1: J2887_11905
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Entry
J2887_11905 CDS
T10810
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
maca Marinobacter sp. CA1
Pathway
maca03030
DNA replication
maca03410
Base excision repair
maca03420
Nucleotide excision repair
maca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
maca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J2887_11905 (ligA)
03410 Base excision repair
J2887_11905 (ligA)
03420 Nucleotide excision repair
J2887_11905 (ligA)
03430 Mismatch repair
J2887_11905 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
maca03032
]
J2887_11905 (ligA)
03400 DNA repair and recombination proteins [BR:
maca03400
]
J2887_11905 (ligA)
Enzymes [BR:
maca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J2887_11905 (ligA)
DNA replication proteins [BR:
maca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J2887_11905 (ligA)
DNA repair and recombination proteins [BR:
maca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J2887_11905 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J2887_11905 (ligA)
MMR (mismatch excision repair)
DNA ligase
J2887_11905 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J2887_11905 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UDL03459
LinkDB
All DBs
Position
complement(2613423..2615462)
Genome browser
AA seq
679 aa
AA seq
DB search
MTQGEPSVAEQMDELRRQIDDHNYRYYVLDDPGIPDVEYDRLFRQLQALEAEHPELVTSD
SPTQRVGAGGDTTFESVTHRIPMLSLDNAFDEEEMREFDRRIHDRLETDEVVEYVCEPKL
DGLAVSLHYQNGVLTRAATRGDGYVGEDITGNVRTIPSVPLKLRGEQVPDQLEVRGEVYM
PKAGFERLNKSLAEQGEKTFVNPRNAAAGSLRQKNPKVTARRPLEMCAYSVAVPDEGVLP
DTQWDCLHQVREWGFRTNPEMRLADGVEACLEAYEDLLAKRADLSYEIDGIVFKVNRLDL
QARLGFVSRAPRWAIAHKFPAEEALTVLEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNA
TLHNMDEIRRLDVRIGDTVFVRRAGDVIPQVVKVVADKRPDNAGEIELPDQCPVCDSDVI
QVEGEAVARCSGGLFCPAQRKEAIRHYASRKALDIEGLGDKWIDILVDRELLKTVADIYT
LRKGDLLGLERMGDKSASNLIAAIDASKTPELWRFIYALGIREVGEATAKGLARHFGTLE
ALAGADEEALQAVPDVGPIVAGHVRSFFDQPHNQETIAALRANGVQWQEEEVAADADARP
LEGQTWVLTGTLTEMTRSEAKEKLEALGAKVAGSVSKKTACVVAGEAAGSKLAKAESLGL
EVLDEAGFVAFLASHGQNG
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgacccaaggcgagcccagcgtagccgagcagatggatgaactgcgacggcagattgat
gatcacaactaccgttactacgtgctggatgatcccggcatacccgatgttgagtatgac
cggctgttccgtcagttgcaggcgctggaggcggagcatcccgagcttgtcacctctgat
tctcccacccagcgggtcggtgccggtggtgacaccacgtttgagtcggtcacccaccgc
atccctatgctgtcgctggacaacgcctttgatgaagaggagatgcgagagtttgatcgc
cgcatccacgatcgcctggagacggacgaggtggtcgagtacgtgtgtgaacccaagttg
gatggtctggcggtcagtctgcactaccagaatggcgttttgacccgggcggccacccgg
ggcgacggctacgttggtgaggacatcaccggcaatgtgcgtaccatcccctcggtgccg
ctgaaactgagaggggagcaggtgccggaccagcttgaggtgcgcggtgaggtgtacatg
cccaaggccggcttcgagcggctcaacaagagcctggcggagcagggtgagaagaccttc
gtgaacccccgcaacgccgccgcaggcagtctgcgccagaagaaccccaaggttaccgcc
cgccggccactggagatgtgcgcctacagcgtggcggtgccggatgaaggggtgttgccg
gatacccaatgggattgcctgcaccaggtgcgggagtggggctttcgcaccaacccggaa
atgcggcttgccgacggtgttgaagcctgtttggaggcctatgaggacctgctcgccaag
cgggcggacctgagctatgaaatcgacggcattgtgttcaaggtcaatcgcctggacctt
caggcccggctgggttttgtttcccgcgcgccacgctgggccatcgcccacaagtttccc
gccgaggaggcgctgacggtgctcgaggatgtcgagttccaggtggggcggaccggcgcg
gtgacgccagttgcccgtctgaaaccagtgtttgtcggtggtgtaacggtgagcaatgcg
accctacacaacatggacgagattcgccgtctggatgtgcgcatcggcgatacggtgttc
gtccggcgtgcgggtgatgtcattccccaggtggttaaagtggtggccgacaagcgcccc
gacaatgccggggagattgagctgccggaccagtgcccggtgtgtgattccgacgtgatc
caggtggagggcgaggccgtggcccgctgctccggtggtctgttctgtccggcccagcgc
aaggaggccatccgccattacgcttcccgcaaggctctggacatcgaagggctgggcgac
aaatggatcgacattctggtggatcgggagttgctgaagaccgtggcggacatctacacc
ctgcgcaagggcgacctgctggggcttgagcgcatgggggacaagtccgccagcaacctg
atcgccgccatcgatgccagcaagacgccggagctgtggcggtttatctacgcgctgggc
atccgtgaagtgggtgaggccaccgccaaggggctggccaggcacttcggtaccctggag
gccctggccggggccgatgaagaagcattgcaggcggtgcctgatgttggccccatcgtg
gccgggcacgtacgcagcttctttgatcagccccataaccaggagaccatcgctgccttg
agagccaacggagtgcagtggcaggaagaagaagtggccgctgatgccgacgcacgcccg
ctggaaggccagacctgggtgctgaccggcaccctgaccgagatgacccgcagcgaagct
aaggaaaagctggaggctctgggtgccaaggtcgccggcagcgtgtccaagaaaaccgct
tgcgtcgtagccggtgaagcggcaggctcgaagctcgccaaggccgagtcactggggctt
gaggtgcttgacgaggccggttttgtcgctttcctggccagtcacggccagaacggctga
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integrated database retrieval system
