Macrococcus sp. IME1552: BHM04_00465
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Entry
BHM04_00465 CDS
T05070
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
macr
Macrococcus sp. IME1552
Pathway
macr03030
DNA replication
macr03410
Base excision repair
macr03420
Nucleotide excision repair
macr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
macr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BHM04_00465 (ligA)
03410 Base excision repair
BHM04_00465 (ligA)
03420 Nucleotide excision repair
BHM04_00465 (ligA)
03430 Mismatch repair
BHM04_00465 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
macr03032
]
BHM04_00465 (ligA)
03400 DNA repair and recombination proteins [BR:
macr03400
]
BHM04_00465 (ligA)
Enzymes [BR:
macr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BHM04_00465 (ligA)
DNA replication proteins [BR:
macr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BHM04_00465 (ligA)
DNA repair and recombination proteins [BR:
macr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BHM04_00465 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BHM04_00465 (ligA)
MMR (mismatch excision repair)
DNA ligase
BHM04_00465 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BHM04_00465 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Zn_ribbon_NUD
HHH
AphA_like
RUBY_RBDX
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
ATD29760
LinkDB
All DBs
Position
96583..98565
Genome browser
AA seq
660 aa
AA seq
DB search
MEKRVQELHQLLHRYNYEYHVLDNPTVPDAEYDKLLHELIAIEEKHPELKTQDSPTVRVG
AEPLSKFDKVDHDTPMLSLGNAFSEEDLIAFDTRVRNEVGSVEYMVELKIDGLAVSLKYV
DGVFVQGLTRGDGTTGENITENLRTIYAIPLTIKEPLTFEVRGEAYMPKSSFIALNEQRA
ANGEQLAANPRNAAAGSLRQLDSRLAAKRKLDIFLYSVNDLREINASSQSEALDRLDAIG
FKTNPERRLCKDMQEVFEYIKLWTEKRENLTYDIDGIVIKVNNLAKQDELGFTAKSPKWA
IAYKFPAEEVVTTLNDIELSIGRTGVVTPTAILEPVNVAGTTVGRASLHNEDLIHEKDIR
IGDSVVIRKAGEIIPEVVRVVLDRRPEGATTYHMPEVCPSCGHELVRIEGEVALRCINPK
CDAKLVEGVIHFVSRTAMNIDGLGERIVQSLYQEGIIHDVADIYNLTREQLLPLERMGEK
KVDKLLSAIEASKSNSLERLLFGLGIRHLGAKASQILAQEYHTMDRLKSATIEALTEIDD
IGHKMAQSLVTYLQNEDIIKLIDKLAASGVNMTYNGQKKEDIEIHPVFGNKTIVLTGKLN
IMSRSDATKALTNLGAKVTSSVTKKTDLVIAGEDAGSKLEKAQTLGIEVWNETMMIEALK
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaagagttcaggaattacatcaacttttacatcgatataattatgaatatcac
gtattggataatccaacggtaccggatgcagaatatgataagctattacatgaattaatt
gctatagaagagaaacatcctgaactgaaaactcaggattcaccaacggttcgtgtcgga
gctgaacctttatccaagtttgataaagttgatcatgatacaccgatgctaagtctaggt
aatgcttttagcgaagaggatttaatcgcatttgatacacgtgttagaaacgaagtaggt
agcgtagaatatatggtagagctaaaaatagatggattagctgtttcactaaaatatgtg
gatggcgtctttgttcagggattaacacgtggtgatggaacgaccggtgagaatatcact
gaaaatttaagaaccatctatgcgataccattaacaattaaagagccgttaacgtttgaa
gtgcgtggggaagcttatatgcctaaaagttcatttatcgcattaaatgaacaacgtgct
gcaaatggtgaacaactggccgcaaatcctcgtaatgctgctgcaggttcactgcgtcag
cttgattcaaggcttgccgctaaacgaaagcttgatatcttcttgtacagtgtgaatgat
ttacgtgagattaatgcatcaagtcaaagtgaagcattagatcgacttgatgcaattgga
tttaagacaaaccctgaacgtagattatgtaaggatatgcaggaagtttttgaatatatt
aagctctggacagaaaaacgtgaaaatttaacatacgatattgatggtatcgttattaaa
gttaataatttagcgaaacaggatgaattaggatttacagctaaatcaccgaaatgggca
attgcttataagtttccggcagaagaagttgtaacgacattaaacgatattgaactatct
atcggaaggacgggtgtggtaacaccaactgcgattttagaacctgttaatgttgcaggt
acgactgttggacgtgcatcacttcataatgaagatctgattcacgaaaaagatattcgt
attggagattctgtcgttattcgtaaagctggggaaattattcctgaagttgtgcgtgtc
gtacttgatcgtagacctgagggtgcaacaacttatcatatgcctgaagtatgtccgtca
tgtggtcatgaacttgtgcgtattgaaggagaagttgccttacgttgtattaatccgaaa
tgtgatgcaaaacttgtagaaggagtaatacactttgtttcaagaacagcgatgaacatc
gatggacttggagaacgcattgtacaaagcttatatcaggaaggtatcattcatgatgtt
gcagatatttataatttaacacgtgaacaacttttaccgcttgaacgcatgggtgagaag
aaagtagataaactactcagtgcaatagaagcatcgaaatccaattccctggaacgatta
ttatttggattaggtattcgtcatctaggtgctaaagcaagtcagatattagcacaggaa
tatcatacaatggatcgcttaaaatctgctacaatagaagcgttaactgaaatagatgat
attggacataaaatggcgcagtcactcgttacttatctgcaaaatgaagatattattaaa
ttaattgataaactcgcggcaagcggcgtcaatatgacgtataatggacagaaaaaagaa
gatatcgaaattcatccggtattcggtaataaaaccattgtacttactgggaaattaaac
ataatgtcacgtagtgatgcaacgaaagcacttactaatctaggtgcaaaagtaacaagt
tctgtaacgaaaaaaacagatttagtcatagcaggtgaagatgctggaagtaagcttgaa
aaagcgcaaacattaggcattgaagtctggaatgaaacaatgatgatagaagcacttaag
taa
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