KEGG   Mycobacterium adipatum: A7U43_20545
Entry
A7U43_20545       CDS       T09402                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
madi  Mycobacterium adipatum
Pathway
madi03030  DNA replication
madi03410  Base excision repair
madi03420  Nucleotide excision repair
madi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:madi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A7U43_20545
   03410 Base excision repair
    A7U43_20545
   03420 Nucleotide excision repair
    A7U43_20545
   03430 Mismatch repair
    A7U43_20545
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:madi03032]
    A7U43_20545
   03400 DNA repair and recombination proteins [BR:madi03400]
    A7U43_20545
Enzymes [BR:madi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     A7U43_20545
DNA replication proteins [BR:madi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A7U43_20545
DNA repair and recombination proteins [BR:madi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     A7U43_20545
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A7U43_20545
   MMR (mismatch excision repair)
    DNA ligase
     A7U43_20545
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A7U43_20545
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase HHH_2 BRCT HHH_5 DNA_ligase_ZBD HHH PTCB-BRCT Nlig-Ia HHH_3
Other DBs
NCBI-ProteinID: ANE81362
UniProt: A0A172UQF1
LinkDB
Position
complement(4326404..4328509)
AA seq 701 aa
MSAGSTSLTRVSSPDAEVRQRWQELAEEVRGHQFRYYVKDAPVVSDAEFDSLLGELQALE
DTFPELRTPDSPTQLVGGAGFTTDFAAADHLERMLSLDNAFDTDELTAWAARVGAEVGAD
IDYLCELKIDGVALALVYREGVLVRGATRGDGRSGEDVTNNARTIEDIPERLTGTDEFPV
PTVLEVRGEVFFRLSDFEELNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRKLRMIC
HGVGKTEGFTPGSLHDAYRALGAWGLPVSTHTAKVQGIEAVAERIAYWGEHRHDVEHEID
GLVVKVDDVTLQRRLGATSRAPRWAIAYKYPPEEVTTKLLDIRVNVGRTGRVTPFAYMEP
VKVAGSTVGLATLHNASEVKRKGVLIGDTVVLRKAGDVIPEVLAPVVELRDGTEREFVMP
TTCPECGTTLAPAKEGDADIRCPNNRTCPAQLRERVFHAAGRGAFDIEGLGYEAGTALLQ
AGVITDEGDLFGLTAEDLLRTELFTTKAGELSANGKRLLANLGKAKSQPLWRVLVALSIR
HVGPTAARALAGEFGSLDAIIAASEAELAAVEGVGPTIAAAVIEWFELDWHRAIVDKWRT
AGVRMVDERDAGIERTLEGLSIVVTGSLTGFSRDEAKEAILVRGGKAAGSVSKKTSYVVA
GDAPGSKYDKAIELGVPVLDEDGFRKLLAAGPEPAPEPAES
NT seq 2106 nt   +upstreamnt  +downstreamnt
gtgtcggcgggctccactagcctgaccagggtgagctcaccggatgcagaggtacgtcaa
cgctggcaggaactcgccgaagaagtgcgcggccatcagttccgctactacgtcaaggac
gcacctgtcgtttcggacgccgagttcgactccctgctgggtgaattgcaggcgctggag
gacaccttccctgaactgcgcaccccggactcgccgacccagctggtcggcggcgccggt
ttcaccaccgacttcgccgcggctgaccatctggagagaatgctgtcgctggacaacgca
ttcgacaccgatgagctgactgcatgggcagcgcgggtgggtgccgaagtcggcgccgat
atcgactatctgtgcgagctcaagatcgacggtgtcgcgctggccctggtctaccgtgag
ggcgttctggtccgcggcgccacccgcggtgacggccgcagcggcgaggatgtcaccaac
aatgcccgcaccatcgaggacattcccgaaaggctcaccggcaccgacgaattcccggta
cccaccgtgctcgaggtgcgcggggaggtgttcttccggctgtccgatttcgaggaactc
aacgccggtctggtggccgaggggaagccgccgttcgccaacccgcgcaacagcgccgct
ggctcgttgcggcagaagaatcccgccgtgaccgcgcggcgcaagctgcggatgatctgc
catggagtcggcaagaccgaggggttcacgccgggctcgctgcacgacgcgtaccgggcg
ctgggcgcctgggggctgccggtgtccacccacaccgccaaggtccagggcatcgaggcg
gtggccgaacgcatcgcctactggggcgaacaccgccacgatgtcgaacacgagatagac
ggcctggtcgtcaaagtcgacgatgtgaccctgcagcgccgtctcggcgcgacctcgcgg
gccccgcggtgggcgatcgcctataagtacccgcccgaagaggtcaccaccaaactcctc
gatatccgcgtcaatgtcgggcgcaccggacgggtcaccccattcgcctacatggaaccg
gtcaaggtggccggatccaccgtcggtttggccaccctgcacaacgcgtccgaggtcaaa
cgcaagggtgtgctgatcggtgacaccgtggtgctgcgcaaggccggcgatgtgattccc
gaggtgctggccccggtcgtcgaactgcgcgatggcaccgaacgcgaattcgtcatgccc
acaacgtgtcccgaatgcggcaccacgctggccccggcgaaggaaggcgacgccgacatc
cgctgcccgaacaaccgcacctgtccggcgcagttgcgggagcgggtgttccatgccgcc
ggtcgcggcgccttcgatatcgagggcctcgggtacgaggcgggcaccgcactgctgcag
gccggggtcatcaccgacgagggcgacctgttcggcctcaccgccgaggacctgttgcgc
accgagctgttcaccaccaaggcgggcgagctgtcggcaaacggcaagcggctactcgcc
aatctcggcaaggcgaaatcccaaccgctgtggcgggtgctggtcgcgctgtccatccgg
catgtcggaccgaccgcggcccgcgcgttggccggcgaattcggcagcctggacgccatc
atcgccgcgtccgaggccgaactggccgccgtggagggtgtcggcccgacgatcgccgcg
gcggtcatcgagtggttcgagctggactggcaccgcgcgatcgtcgacaagtggcggacc
gccggggtacggatggtcgacgagcgcgatgccggcatcgaacgcaccctggaggggctg
tcgatcgtggtgaccggttcgctgaccggcttctcccgcgacgaggccaaggaggcgatc
ctggtccgcggtggtaaggcggccggatcggtctccaagaagacgtcatacgtggtcgcc
ggcgacgccccgggatccaagtacgacaaggcgatcgaactcggggtgccggtgctcgac
gaggacggcttccgcaagctgctcgcagcggggccggagcccgcgcccgagccggccgag
agctag

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