Mya arenaria (softshell): 128205514
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Entry
128205514 CDS
T09995
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1-like isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
maea
Mya arenaria (softshell)
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
maea03036
]
128205514
03400 DNA repair and recombination proteins [BR:
maea03400
]
128205514
Chromosome and associated proteins [BR:
maea03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
128205514
DNA repair and recombination proteins [BR:
maea03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
128205514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Motif
Other DBs
NCBI-GeneID:
128205514
NCBI-ProteinID:
XP_052763185
LinkDB
All DBs
Position
10:complement(4735487..4827326)
Genome browser
AA seq
2047 aa
AA seq
DB search
MDVMAEFLTKMAAPSQAKDDGFIFVYDRREKDAPEKTISTQKILSFSDLKAKIIEEFGLK
KSDKFVISTTNREEVNDNDSWDVVGSGETLYLLKNLDQELCAPARERVNYLPHYDTIVKG
GMYEYYASEGQNPLPYAFAELIDNALAATRNNEGPRNIEIRVNLDESTIYVLDNGKGMTS
RQLNNWAIYRLSKFIRKDKRSKVNLDETVEEEESFVEQDAPKSLNSDISYFGVGGKQAVF
FIGNATRMISRPVGSKDVHELTISREEFEKKEKNHEEIYSGFIRNRKPGDAAHVSKEDET
LCSLIGEEPGRDHFTAVIVQGVSKEHMLYLKEKLKEWTRQLAHIYHYYLHGPSGNVEHAD
ENTRAPSPFKNIDIEVKLYQTRNPVPKTINLRDIDNDMQTQFVRGAASTFEFNAVIEGAK
VEGVLRYHPFLYDRETYPMDPYEKPEMTLEDEHGYAVSEVPARGRRPIFECFWNGRLIPY
TMIDSFEWCNPTKKSKNVPSECCNRVSGVLWTDDNFQVSTNKLTFIDLELKLRDKLASFC
RVLNGQEKRTSIEKEFMGWLRECHEQFDKQIHFTEYQGQIVRLDLPKNRQTPWAAYKQVE
WDGKVYKAGQMVRIVRTLPFFLGTVNRILLYGDHEGDTYATGGDLEVIQEPRSLYNEVKI
VPLSKLDRTVNNQMVKKFIEDEEAKLPSELDISFPEGNRVVNNEKRKAGKPIGDIKIEII
NKKGDKVKSLPGKEQANKKLLVELKVIWHAAGGDQTIVSHISQHGKNWPYWFRKMENVNY
LGNYTLTLQVVLNESGENTFAGRELPGRKYKFQVVEGEAERFSVGLLEGPFRVGVPFNIP
LELQDAYGNPAKIDMGKVDVKSITPVLEASGLELAYGGTSTKGHTLTIKDVEAQGQVQGN
TGKNFSLTITVPELNKFAQVLKIRLLPGPASILSVSPEEELSVVNGSAPIYRVQIQDVAG
NPTILEGRQSIVCKLSGAPGLPSYSLDSLSINGGNLTGESIFLKKIKSNTKLTAKFDVQG
SKTIKPVERKMVVVPSGKICDMKVCYPDPDTKKQITITNGMEIIIRAGETLEGLTYKLYD
EGEREVDITEKVASKIKINWLAKLNKDILMKGQLPGIKATNSVLELKYCQVSVAESSGLE
LGFVLKTTAWEPHGLNCTLTGSNKISIGQPLAGELLVKIIDKFGNKIDMDGKGFVNELAA
HISGEGLKKELCKITYDKQLMSAIIKGIVFEGGTIGKKELQIQWKSLKDYVRLEMVAGPP
AKIKFLHYNPDEELVLYNESQFPKPIVVQLLDEGENPARVADIKMQLAKDTKLKLIPTVQ
PTKTNKEGVADFGMYTISCSQGKYEVQPKAFISTSFVLSGPKLKISIQPDPTRPASLNVV
YNTKLTLVVGQSLPEYTVTVVSEDGSPLTTAKCSHVSLKLWKSDGYDSNSLPSRTLSHNP
ETTKKSEAGVFHFRNIDTPEESGPYNIMFVFYDGKHQLFSSVIHTKIEPGVPVKLFALEE
LGTATISNSKNVNTRCIVRNLKLELRDKFNNHVTRGMNGCVNVQVSCPTDEKELPMLHGT
SSKSRVLQFTLAGGSCTIQMVAIQENSPGKDGCQYELNCSVVWCDPIPVKTTLEPLCIPF
LFYNDAKKQTEMAALTKERDSLVNAIKVYRSLFETSEQLIQELKISVKEMKSDENRYREE
LRRQKVPIASTNSVEGVEKLLKEYNEKKLEESSRKRRLCGLQTIAANDPDVLGKIGHLAL
ISDDDAARVLSWHMSSDMDCVVTLTTKKAKEIYSMTSGRQQVLPLDSIFKKSLTEWNKPL
PHVKYKPNWRPAGNPVFARNLLTFEKNQDMCKTVFSMLLGDTLWIDTLDQANNYRIELVK
YTNCPTILTREGDRIRSNGKFGGLMNKAPPVEKLRGAVFGAQLPEGYHKVCSVIDTLTRL
HSALQTHNTAQEELDDQLAVIQAPEMQAKYEECREVEKQLKDLEKRIGMTSPHRTVTPSL
LPKIPKRTPDREEENNRSVKRLRGSPASSDSNSVTSVTPSLLTPTRQSRRLAAQSPADEG
RKKLKKS
NT seq
6144 nt
NT seq
+upstream
nt +downstream
nt
atggacgttatggctgagtttctgacaaaaatggcggcaccaagccaagcaaaagatgat
ggatttatttttgtttacgatcgaagggaaaaggatgcacctgaaaagacaataagcacg
cagaagatattatcattttcggatttgaaagctaaaattattgaggagtttggattgaag
aagtcggacaagtttgtcatatcaaccactaacagagaggaagtcaatgacaatgactcg
tgggacgttgtgggttcgggcgagacactgtaccttctcaaaaacctggatcaagagtta
tgtgcccctgcccgggaacgagtcaactacctacctcactacgacaccatcgtcaagggg
ggcatgtacgaatactatgcctctgaaggacagaacccgctaccatacgcttttgccgag
ttgatagacaatgccctggctgccaccaggaataacgaggggcccaggaacatcgaaatc
agagtgaacctagatgagtctacaatctatgtgctggacaatgggaagggcatgacgtca
cgccagctcaacaactgggccatctacaggctctccaagttcatacgcaaggacaaacga
tctaaagtaaaccttgacgagaccgtcgaagaagaggaatcgtttgtcgaacaagatgca
cccaagtccctcaacagcgatatatcatactttggtgtgggcgggaaacaggccgtgttc
ttcattggcaatgctacacggatgatatcccgtccagttggctcaaaggacgtgcacgag
ttgaccatctcaagggaggagtttgagaagaaggagaagaaccatgaggagatctacagt
ggcttcatccgcaacagaaagccgggtgatgcggctcatgtttccaaagaagacgagact
ctgtgtagcctgataggagaggagcccggccgggatcatttcactgccgtcatagtacag
ggcgtgagcaaggagcacatgctttacctgaaggagaaactcaaagagtggacacgacaa
ctcgcccacatctaccactactacttacatggcccaagtggcaatgtggagcatgctgat
gaaaacaccagggcaccatcgccattcaaaaacattgacattgaggtcaaactgtatcaa
actcgcaacccagttcccaaaaccatcaacctccgggacattgataacgacatgcagacc
cagtttgttcgcggggctgcgagtacatttgagtttaacgccgtcattgagggggcaaag
gtggagggggtgttgaggtatcatcccttcttgtacgacagggagacataccctatggat
ccatatgagaaacctgaaatgactctagaagatgaacacggctatgctgtgagtgaggtg
ccagcaaggggaaggagacccatctttgagtgcttctggaatggccgactcataccctat
accatgattgacagctttgagtggtgcaacccaacaaaaaaatccaagaatgtcccttca
gaatgctgtaacagggtgtctggtgtgttatggacggatgacaatttccaagtgagcacc
aacaagttgaccttcattgaccttgaactcaaactgagggataaacttgccagcttctgc
agggttcttaatggacaggaaaagcgcacctctatagagaaggagtttatgggctggttg
agggagtgtcacgagcagtttgacaagcaaatccacttcacagagtaccagggacagatc
gtgaggctcgacctgcccaagaacaggcagactccgtgggctgcgtataaacaggtcgag
tgggacgggaaggtctacaaggctggacagatggtgcgtatagtgcggaccctgccgttc
ttcctgggaaccgtcaaccggatcctgctttacggggaccatgaaggagacacgtatgcc
actgggggcgatcttgaggtcatacaggagccgaggtcgctgtacaacgaggtgaagata
gttcccctctcaaagctagacaggacagtgaacaaccagatggtgaagaagttcatcgag
gacgaggaggcaaagctgcccagtgagctggatatttcattccctgagggaaacagggtg
gtcaacaatgagaaaaggaaggccgggaaacccataggtgacatcaagatagagatcatc
aacaagaaaggcgacaaggtgaaaagtctgccaggaaaggaacaggctaacaagaaactc
ctggtcgagttgaaagtcatctggcatgcggcgggaggtgaccagactatagtatcccac
atcagtcagcatggcaagaactggccgtactggttcaggaaaatggagaatgtgaactac
ctgggaaattacacactcaccctgcaggtggttcttaacgagagtggggaaaacacattt
gcaggcagggagcttccaggacggaaatacaagttccaggttgtagagggagaggctgag
aggttctctgtaggtctgttggaagggccattcagggtcggagtgcccttcaatattccc
ctggaactgcaagatgcatacggtaatcctgccaagattgatatgggcaaggtggatgtg
aagtcaataacccctgttctagaagcaagtggcctggaactggcttatgggggtacgtca
accaagggtcacacactgaccatcaaggatgttgaggctcaaggtcaagtacaaggaaac
actggcaagaacttcagtttgacaatcacagtgccagagttgaacaaatttgcccaggtg
ttgaaaatcaggcttctaccaggtcctgccagtattctaagtgtaagccctgaagaggag
ctatcagtggtgaatgggtcggccccgatataccgcgtacagattcaggatgtggcgggt
aaccctaccatactggagggcagacagagcattgtgtgtaagttgtcaggtgctccgggc
ctgcccagctactccctggacagtctcagtatcaacggggggaacctcacaggggagtca
atttttctcaaaaagatcaagtcaaataccaagcttacagcaaaattcgatgttcaggga
tctaagaccataaagcctgttgaacgtaagatggtggttgtcccgagtggtaagatatgt
gacatgaaagtgtgctaccccgaccccgacaccaagaaacagataaccatcaccaacggc
atggagattatcataagggctggagaaaccctggaggggcttacgtataagctgtatgat
gagggagagagagaggtggacatcactgaaaaggttgcctctaagataaagattaattgg
ctagccaagctgaacaaggacatactgatgaagggccagttaccaggaatcaaggccact
aactctgtattggagctcaagtactgtcaggtgtctgtggcagaaagctctggccttgag
ctgggatttgtactcaagacaacagcgtgggaaccacatggccttaactgcacattgact
ggctccaacaagatcagtattggtcagcctttggccggtgaacttctggtcaagattatt
gacaagtttggcaataaaattgatatggatggtaaaggttttgtgaatgagttagcagcc
cacatcagtggagaggggcttaagaaggagctgtgtaagattacatatgataagcaactg
atgtcagcaataattaaaggcatagtgtttgaaggtggaacaattggtaaaaaagagctt
cagattcagtggaagagcctcaaggattatgtccgcctagaaatggtggcagggcctccc
gcaaagatcaagttcctacactataaccctgatgaggagctagtgttatacaacgaaagc
cagttcccaaagccgattgttgtacagttactagatgagggtgaaaacccagcccgggtc
gccgacataaagatgcagcttgctaaggacaccaaactaaagttgattcccactgttcaa
cctaccaagaccaacaaggagggcgtggcagactttggcatgtacaccatctcctgctca
cagggaaaatatgaagtgcagccgaaggcgttcatctctaccagttttgtcctgtctggc
cctaaactgaagatatccatccagcctgaccccacacgcccagccagtctcaatgtggtc
tataacaccaagttgactctcgtagttggacagtctttgcctgagtacacagtgacagtg
gtatcagaggatggtagtccgctgaccacggccaagtgttcccatgtgtccctcaaactc
tggaagtctgatggctatgatagcaacagtctgcccagcaggaccctgtcacacaaccct
gaaacaacaaagaagtctgaggcaggagtcttccattttaggaacatcgacactccggag
gagtcaggcccttacaacatcatgtttgtcttctatgacggcaaacatcaactcttcagc
agtgtgatccacacaaagatagagccaggagttcctgtgaagctgtttgccctggaagag
ctgggtacagccaccatctccaacagtaagaacgtcaacaccaggtgcatcgtcagaaac
cttaaactggaactcagggacaagtttaacaaccatgtgacccggggcatgaacggctgt
gtgaacgtccaagtgtcgtgtcccacagatgagaaagagctcccaatgttacatgggaca
agctccaagtctcgagtgctccagtttaccctggcagggggcagctgtactatacagatg
gtagctatccaggagaacagtcctgggaaggatggctgtcagtatgaactcaactgtagc
gtcgtgtggtgtgatcctatacctgttaagactacgctggaaccactatgtatacccttc
ctcttctataacgatgcgaagaagcagacggagatggctgcactgaccaaggagagagat
agcctcgttaacgccatcaaggtctacaggtccctgtttgagacatcagaacagcttata
caggaacttaaaatctcagtgaaggagatgaagtcagatgagaacagatatagagaggag
ctgaggagacagaaggtcccaatagcgagcactaattctgttgaaggtgttgaaaagctg
ctgaaggagtataatgagaagaagttggaggagagtagccggaaacgtcgcctgtgtggg
ctacagaccattgccgctaatgatccagatgtactcggcaagataggtcacctggcgttg
atatcagacgatgatgcggccagagtactctcctggcacatgtcttccgacatggactgt
gtcgtcactcttaccactaaaaaggctaaggagatctacagcatgacgagtggtcgccag
caggtgctgcctctggactccatcttcaagaagagtctcacagagtggaacaaaccgctg
cctcatgtcaagtacaagcccaactggcgcccagcaggaaaccccgtgtttgccaggaac
ctgctcacatttgagaagaaccaggacatgtgtaaaactgttttctcaatgctgctagga
gacacattgtggattgatacccttgaccaggctaacaactacagaatagagctggtgaag
tacaccaactgcccaaccatcctgacgagagagggtgaccgtatccgtagtaatgggaag
ttcgggggtctcatgaacaaggcccctcctgttgagaaattgagaggtgccgtgtttggg
gcacagttgccggagggataccataaagtctgctctgtcattgataccctgacacggcta
cattcagctctacagacccacaacacagcccaggaagagcttgacgaccagctggccgtt
atccaggctcctgagatgcaggccaagtatgaagaatgtcgggaggttgagaaacaactc
aaggatcttgagaaacgtataggtatgacctcaccacacagaactgtcacaccgagcctg
ctaccgaagataccaaaacgtacgccagacagagaagaagagaacaatcgaagtgttaaa
cgtcttcggggctccccagcctcctcagacagtaacagtgtaacatcggtcaccccctcc
ctcctcaccccgacacgccaaagtcgacgtcttgctgcacaaagtcctgctgatgaggga
aggaagaagttgaaaaagtcatga
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