Mya arenaria (softshell): 128214944
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Entry
128214944 CDS
T09995
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
maea
Mya arenaria (softshell)
Pathway
maea03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
128214944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maea03400
]
128214944
Enzymes [BR:
maea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128214944
DNA repair and recombination proteins [BR:
maea03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
128214944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
BRCT_2
DNA_ligase_IV
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
128214944
NCBI-ProteinID:
XP_052777625
LinkDB
All DBs
Position
13:complement(52341193..52379887)
Genome browser
AA seq
918 aa
AA seq
DB search
MDAADQGPKSPTVASKVHFAELCGLLEKISKTQGNDKKKKILKDFVGQWRKSHETLHGKD
AQTTDSFHPAMRLLLPHLEKERIAYGIKEHMFAKLLIEVLCLGKDSQDAQRLLNFKSPKS
AKADVGDFASVVYFVLQSRCPSRGSLFIEEVNDCLDGIATNNAAKKKDIVRKHIVRLITN
MSALELKWLTRMIVKELKIGLSQASVLSVFHPDAEEFYNVNNNLEKVCRMMHDPSVRIHE
IGITVFSPFTPMLGERASPDKVDKLMEGKPYYIETKFDGERMVLHKDGGDYKFYSRSGNE
HTGVFGSNQFDGNLVPYIHNIFKPDLQSCIMDGEMILYHPETKTYATKAMNTDVKTVNKD
GFQPCLHVFDIMLYNGRVLTNLPLRERLPFLEKAFTPCEGRMIISQHRDARTNQDCADAL
NEAIDGREEGIMVKNPESVYRPNTRKGGWFKVKPEYVGGLMDELDVLVVGGYFGVGHRAG
MMSHFLCAVAVPPTDGDKPELFYSFCKIGSGYSKKELRDFNAKLVDHWQAFDKKNPPRCI
ELASGFKEKPDAWIDPSKSAIVQIKAAEIIDSERFRCGFTLRFPRVEKFRDDKHWYECMT
FEEVKELKQKSGGKLAGGYVELGGEEEPVKKKRKVVSRAVRPTLGSQFRAADTSDVKQVS
KLLEGKELCVINGPSGLNKQQLETKIVECGGTVIQNPGAETYCVIVEKVNFRVSSMIKSN
RYDIVRAEWLIRCFDANTLKPWSPDDMVHATGATKRLFDRDYDDFGDSYVEDTTPERLQS
VMAKIDVKSKDTLDNFEIAKLEDEHFPDESPYGLFRTCKIYLDNCAIVDDPTTHIKDSSL
DLLALELRFFGASVSRRFSNDVSHVMVDLSDKSRVAKLKKVRGGRQRKFHIVTEEWVREC
MEEGNIVNERAFEPGLDS
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggatgctgctgaccaagggcccaaatcaccaaccgttgcttccaaagttcactttgca
gagctgtgtggtctgcttgagaaaatttccaaaacccagggaaatgacaagaaaaagaaa
atattgaaagactttgtaggtcaatggaggaagtcacatgaaacacttcatggcaaggat
gcacaaacaactgactcttttcatccagccatgcgactgttgctgccacatctagaaaaa
gaaagaattgcatacggcattaaagagcatatgtttgctaagctgctgatcgaggtgctc
tgccttggtaaagacagtcaggatgcccagcgccttctcaacttcaagtcgccaaaatca
gcaaaagctgatgttggagacttcgccagtgttgtgtattttgttctccaaagtcgctgc
ccaagtcgagggagcctttttattgaagaagtcaatgattgtttggacgggatagcaacg
aacaatgctgcaaaaaagaaggatattgtgaggaaacacattgtccggctcataaccaat
atgtctgccctggagttaaagtggctgactaggatgattgttaaggaattaaagataggc
ctgagccaggcttcagtattgtctgttttccacccagatgcagaggagttctataatgtc
aacaataacctggaaaaggtttgtcgaatgatgcatgatccgtctgtgcgcatacacgag
attggtatcaccgtgttttctcccttcacaccaatgcttggcgagagagcttcaccagat
aaggttgacaagctgatggaaggtaagccgtattacatcgagacaaagtttgatggcgag
agaatggttcttcataaagatggcggagactacaagttctactccagaagcggtaatgag
cacactggcgtgtttggttcaaaccaatttgatggaaatcttgtgccctatatccacaac
attttcaaacctgacttgcagtcctgtattatggatggagaaatgatactctaccaccca
gagactaagacttacgccacaaaagcaatgaacacagacgtaaagacagtgaacaaagat
ggcttccagccgtgtctgcacgtgttcgacataatgttatacaacggccgcgtgctgacg
aaccttcccctccgagagaggctcccgtttcttgagaaggcttttacaccgtgtgagggc
cgcatgatcatcagccaacatagggacgccagaacaaaccaggactgtgcggacgccctt
aacgaggctatagatggacgggaggagggaattatggtgaagaaccctgagtctgtgtac
agacccaacaccaggaagggtggctggttcaaggtgaagccagagtatgttggaggtctc
atggatgagcttgatgtgttggtcgttggcgggtattttggggtcggacatcgcgctggt
atgatgtcacacttcctgtgtgctgtcgcggttccacccacagacggggacaaaccggaa
cttttctactcgttttgtaagattgggtcgggctacagtaagaaggagttgcgggacttt
aacgctaaactcgtggaccactggcaggcatttgataagaagaacccacctcgctgtatc
gagcttgcttcagggtttaaggagaaacctgatgcctggattgaccccagcaagtctgca
attgtacagataaaagctgcagagataattgacagcgaacgtttccgatgtgggttcaca
ctgcgttttccgcgggttgagaagttccgagatgacaaacattggtacgagtgtatgacc
ttcgaggaggtcaaggaactcaaacagaaatctggtgggaagctggctggcggctatgtc
gagttgggaggagaggaagagcccgtcaagaagaaacgcaaagtcgtcagcagggctgtt
cgtcccactctgggctcacagttccgggcggctgacacctcagatgttaaacaggtatcc
aagttacttgagggtaaagagctatgtgtgatcaatggtccgagtggtttgaataaacaa
cagctggagaccaagatagtcgagtgtggcgggactgtcatacagaacccgggtgccgag
acctactgtgtgattgtggagaaggtcaacttccgtgtgagcagtatgatcaaatcgaac
cgttatgatatagtgagggccgagtggcttatcagatgttttgatgccaatacactcaag
ccttggagtccagatgacatggtacatgctactggggcaaccaagcgtctgtttgaccgt
gactatgatgatttcggagacagttatgtggaggacacgactcccgaacgacttcaaagt
gttatggcgaaaattgatgtgaaatccaaagacacgctggacaactttgaaatagcaaag
ttagaagatgaacatttccctgatgaatccccttatggtctcttcagaacatgcaagata
tatctggacaattgtgcaatagttgatgaccctacaacccacatcaaggactccagtctg
gaccttctggccctggaactgaggttcttcggggcgtctgtgtcacggaggttttctaac
gacgtctctcatgttatggttgatctcagtgataaaagtcgagttgcaaagttgaagaag
gttcgtggaggacgtcagcgcaagtttcacattgtgacggaggagtgggtccgggaatgt
atggaggaaggaaatattgtaaacgagcgagcattcgagcctggactggattcctga
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