Mya arenaria (softshell): 128244860
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Entry
128244860 CDS
T09995
Name
(RefSeq) TAR DNA-binding protein 43-like isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
maea
Mya arenaria (softshell)
Pathway
maea03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
128244860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128244860
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
128244860
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GFIT
Motif
Pfam:
RRM_1
TDP-43_N
RRM_PARP14_3
RRM_7
Nup35_RRM_2
GlcNAc-1_reg
Motif
Other DBs
NCBI-GeneID:
128244860
NCBI-ProteinID:
XP_052818924
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Position
8:complement(20451580..20462762)
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AA seq
418 aa
AA seq
DB search
MTTFVRVTDDESELEIEIPTEEDGVDQDGTILLTSLVAQFPGACGLKYRSETGGLRGVRL
ANGSLYPPGGMWGDTVYIVNFPKESKRKVDEELENPVSSKMKKVETRKTSDLIVLGLPWK
STEDDMKAYFEQFGDLVLTQVKRDPRSGQSKGFGFIKFKDYEAQLRCLAARHRIDGRWCE
VNLPNSHTEQDNNPTNRKIFVARCTEDLTNEELREYFEQFGEVVDVFIPKPFRAFAFVTF
ADPLVAERLCGEDHIIKTASVHISSAEPKAKEQQIERQQGRNRGGNFGRGEMWDNSGSGQ
DAGLARGNNPVQNKSEMNAMGIEPNMNNIGMNMFSSAMLAAAQAVFQGAQNPNSSSYELG
PGFGGTRDSRSGGFNNDSASGQNSYSQWGNRSGGGGGYNNSSSSSGWGQGASGRGNWN
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgtttgtgagagttacagatgacgaaagtgagcttgaaatcgagattccgaca
gaagaagatggcgtagatcaagatgggacaatcttgcttacttcattggttgcacaattt
cctggcgcctgtgggttgaaataccgatcggaaactggaggactccgaggtgttaggcta
gcaaatggtagcctctacccgcctggtggaatgtggggagacactgtttacattgtaaac
tttccaaaagaatcaaaacgcaaggttgatgaagagttggaaaatccagtctcttcaaag
atgaagaaggtggagactaggaagaccagtgatctgattgttctcgggctcccatggaaa
agcacagaagatgacatgaaggcctactttgaacagtttggtgatctagttctcacacag
gtgaaaagagatcccaggagtggccagtcgaaggggtttggctttataaagttcaaggac
tatgaagcacaactgaggtgcttggcagctagacacaggatagatggaagatggtgtgaa
gttaatctgcccaattcacatactgagcaggataacaatccaacaaatcgaaagatattt
gttgccagatgcacagaagaccttacaaatgaagagcttagggaatactttgaacagttt
ggggaggtcgttgatgtcttcataccaaagcctttcagagcctttgcattcgttactttt
gccgacccccttgtcgcagagaggctgtgtggtgaggaccatattataaagactgccagc
gttcatatcagcagcgcagagccaaaggcaaaggaacagcagatagaaagacagcagggc
cgaaataggggaggcaactttggaaggggcgaaatgtgggacaactctggctcaggacaa
gatgctgggctggccaggggtaataacccagttcaaaataagtctgaaatgaatgctatg
ggtatagaaccgaatatgaataatatcggaatgaacatgttcagttcagcaatgcttgct
gcagcacaggctgtgtttcagggggcgcaaaatccaaactcatctagttacgagttgggg
ccaggttttggagggactagggatagtcgaagtggggggtttaataatgatagtgcttct
gggcagaatagttactcgcagtgggggaataggtctgggggagggggaggttacaacaat
tcatcctcctcatcaggttgggggcagggggcaagtgggaggggcaactggaactag
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