Marinitoga aeolica: JRV97_10720
Help
Entry
JRV97_10720 CDS
T09568
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
maeo
Marinitoga aeolica
Pathway
maeo03030
DNA replication
maeo03410
Base excision repair
maeo03420
Nucleotide excision repair
maeo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
maeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JRV97_10720 (ligA)
03410 Base excision repair
JRV97_10720 (ligA)
03420 Nucleotide excision repair
JRV97_10720 (ligA)
03430 Mismatch repair
JRV97_10720 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
maeo03032
]
JRV97_10720 (ligA)
03400 DNA repair and recombination proteins [BR:
maeo03400
]
JRV97_10720 (ligA)
Enzymes [BR:
maeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JRV97_10720 (ligA)
DNA replication proteins [BR:
maeo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JRV97_10720 (ligA)
DNA repair and recombination proteins [BR:
maeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JRV97_10720 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JRV97_10720 (ligA)
MMR (mismatch excision repair)
DNA ligase
JRV97_10720 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JRV97_10720 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
DNA_ligase_ZBD
HHH
BRCT_2
5_3_exonuc
STALD
Motif
Other DBs
NCBI-ProteinID:
WGS64812
LinkDB
All DBs
Position
complement(2270608..2272608)
Genome browser
AA seq
666 aa
AA seq
DB search
MIPENIKKEYNELKNLIEKYNYHYYVLNNPLISDTDYDKLFNKFIKLEKKYPELKTPDSP
SYRVGGYIISEFKTVQHTVPMLSLDNTYNEQDILEFHERVKKLLNKENVDYSCELKIDGI
SISLRYEKGILSQAITRGNGITGDDVTENVKTIRSIPLKLKEEIDIEVRGEIFMPKKEFL
RINEQREEEGLAVFANPRNATAGTIKSLDTSEVAKRHLDSFIYYILNPENYNLKTQYEAL
IYLKDLGFKTNEHSKLAKNIDEVIEYWKYWTENKKDLDYDIDGTVIKVNSFEEQAILGST
ARSPRWAIAFKFPAEQAITKVKDIVFQVGSTGIITPVAIFEPVFLEGTTVQRASLHNFEY
IKERDIRINDYVKIEKAGGIIPQIVNVIIEKRNGNEIPVKEPEKCPVCGGEVGKLNPSEV
AIRCLNPLCKAKLKRNLEVWVSRDAMNIQGLGPKLINRIVEAKLVEKVSDLYKLDHFKLA
TLGYGVGPKMISKILQQIEDSKQRGLDKVLYGLGIPNVGKKIAKDLAKKFKSIDNLITAE
YDELISIEGIGDDIAQQIYDFFRNDRVREIIDELKKAGVKLENEEITSEGIFNGVSICAT
GELERMPRSKLKELIEKNGGVFKDTVTKKLDLLVVGKNAGSKLEKAKKFGIPIMTEEEFF
NKYNIM
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgataccggaaaatattaaaaaagaatacaatgaattaaaaaatttaattgaaaaatat
aattaccattattacgttttaaataatcccctaatttcagatactgattatgataaacta
tttaataaatttataaaattagaaaaaaaatatccagaattaaaaacacctgattcacca
agttatagagttggtggttatattatttctgaatttaaaactgtacaacatacagttcct
atgttaagtttggataatacctataatgaacaagatattcttgagtttcatgagagagtt
aaaaaactattaaataaagaaaatgttgattatagttgtgaattaaaaattgatggtata
tctatttctttaagatatgaaaaaggaatattatcccaagctattacaagaggaaatgga
ataactggtgatgatgttacggagaatgttaaaacaattcgcagcattccattgaaatta
aaagaggaaatcgatattgaagtgcgtggagaaattttcatgcctaaaaaagaatttcta
agaataaatgaacaaagagaagaagaaggattagcagtttttgctaatccaagaaatgct
actgctggaacgataaaatctcttgacacatcagaagttgcaaaaagacatcttgattct
tttatatattatattttaaatccagaaaattataatttaaaaactcaatatgaagcttta
atatatttaaaagacttaggatttaaaaccaatgaacattcaaaacttgcgaaaaatatt
gatgaagtaatagaatattggaaatattggacagaaaataaaaaggatttagattatgat
attgatggtacagtaataaaagttaattcttttgaagaacaagcaattttaggtagtaca
gcgcgatctccaagatgggctatagctttcaaattccctgcagaacaggcaataactaaa
gtaaaagatattgtttttcaagttgggagcacgggaattataaccccagtagcaattttt
gaacctgtattcttagaaggaactacagttcaaagagcaagtttacataattttgaatat
attaaagaaagagatattaggattaatgattatgttaaaatagaaaaagctggtggaata
atacctcaaattgttaatgttattatagaaaaaagaaatggcaatgaaataccagttaaa
gaaccagaaaaatgtcctgtttgtggtggagaagttggaaaattaaatccatctgaagtt
gctataaggtgtttaaatccattgtgtaaagcaaaacttaaaagaaatttagaagtatgg
gtttcaagggatgcgatgaatattcaaggtcttggtcctaaacttataaacagaattgtt
gaggcaaaattagtagaaaaagtatcagatttatataaattagatcattttaaattagca
acgttaggttatggagttggacctaaaatgattagcaaaatacttcaacaaatagaagat
tcaaaacaaagaggtcttgataaggtattatatggtttaggaataccaaatgttggaaaa
aaaatagcaaaagaccttgctaaaaaatttaaatctatagataatttaataactgctgaa
tatgatgaattaatttcaattgaaggtataggcgatgatatagctcaacaaatatatgac
ttttttagaaatgatagagttagagaaattatagatgaattaaaaaaagctggtgtaaaa
ttagaaaatgaagaaataacttctgaaggaatatttaatggagtatctatatgtgctact
ggagaattagaaagaatgcctaggagcaaattaaaggaattaattgaaaaaaatggaggg
gttttcaaagataccgttactaaaaaattagacctattagttgttggaaaaaatgcaggt
agcaaacttgaaaaagctaaaaaatttggcataccgataatgactgaagaagaatttttt
aataaatataatattatgtaa
DBGET
integrated database retrieval system
