Microvirgula aerodenitrificans: DAI18_02825
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Entry
DAI18_02825 CDS
T09834
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
maer
Microvirgula aerodenitrificans
Pathway
maer03030
DNA replication
maer03410
Base excision repair
maer03420
Nucleotide excision repair
maer03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
maer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DAI18_02825 (ligA)
03410 Base excision repair
DAI18_02825 (ligA)
03420 Nucleotide excision repair
DAI18_02825 (ligA)
03430 Mismatch repair
DAI18_02825 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
maer03032
]
DAI18_02825 (ligA)
03400 DNA repair and recombination proteins [BR:
maer03400
]
DAI18_02825 (ligA)
Enzymes [BR:
maer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DAI18_02825 (ligA)
DNA replication proteins [BR:
maer03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DAI18_02825 (ligA)
DNA repair and recombination proteins [BR:
maer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DAI18_02825 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DAI18_02825 (ligA)
MMR (mismatch excision repair)
DNA ligase
DAI18_02825 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DAI18_02825 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AVY93093
UniProt:
A0A2S0P711
LinkDB
All DBs
Position
604228..606300
Genome browser
AA seq
690 aa
AA seq
DB search
MTLSASPAARAAQLRALLHRYNHEYYVLDTPSVPDAEYDLRFRELCELERAHPELRSADS
PSQRVGGLPLAAFGEVRHAVPMLSLNNVFSDMQADDPAQRHAELLAFDARVREGLGRERV
EYAVEPKFDGLAVSLVYEDGVFVQGATRGDGSTGENVTENLRTVQSIPLRLTPPPATDLF
ATPLPARLEVRGEVLMLKRDFERLNADQAAAGLKVFVNPRNAAAGSLRQLDSRITASRRL
AFFAYSLVEPDGADAPPSHSATMDWLQQLGFPVCRERTVVCGVEALIHEYESILERRATL
PFDIDGVVYKVNAVADQHQLGFVSRAPRFAIAHKFPAEEALTVVEAITVQVGRTGAVTPV
ARLQPVFVGGVTVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVAAVADRRPADAA
EFVMPTQCPVCGSHIVRAEDEAIARCSGGLYCSAQRKQALQHFASRRALDIEGLGEKLVD
QLVEKQWVTTPADLFRLQADQLAGLDRMGDKSAQNLVQAIDVARHTRFERFIYALGIRNV
GESTARDLARHFGTLDALMAADETALVAVPDVGPIVARSIVDFFAESHNRDVVADLCALG
VDWPQVAATTDSYVDGVAGKTFVLTGTLPTLTRDDAKARIEAAGGKVAGSVSKKTDYVVA
GDAAGSKLDKAQALGVAILDQDGLLALLGS
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgaccctctccgcatcacctgccgcgcgcgcagcccagctgcgcgcgcttttgcatcgt
tacaatcacgagtattacgtgctcgacacgcccagcgtgcccgacgccgaatacgatctg
cgcttccgcgaactgtgcgagctggaacgcgcgcaccccgaactgcgcagtgccgactcg
cccagtcagcgtgtcggcggcctgccgctggccgcgttcggcgaagtccgccatgcggta
ccgatgctgtcgctgaacaacgtcttttccgatatgcaggccgacgacccggcgcagcgc
catgccgagctgctggccttcgacgcccgcgtgcgcgaaggcctcggccgcgagcgggtc
gaatacgcagtcgaaccgaaattcgacggtctggccgtcagcctggtgtacgaggacggt
gtgttcgtgcagggcgcgacccgtggtgacggcagcaccggcgagaacgtgaccgagaac
ctgcgcaccgtgcagtcgatcccgctgcggctgacaccaccgccggcgaccgacctgttt
gccacaccgttgccggcacgactggaagtgcgcggcgaagtgctgatgctgaagcgcgac
ttcgagcggctgaacgccgaccaggccgccgccggcctcaaggtcttcgtcaatccgcgc
aatgccgccgccggcagcctgcgccagctcgattcccgcatcacggccagccgccggctg
gctttcttcgcctactcgctggtcgaaccggacggcgccgacgcgccgccatcccattcc
gccaccatggactggctgcagcagctgggcttcccggtctgccgcgagcgtacggtggtg
tgcggggtcgaggcactgatccacgagtacgagtccattctcgaacggcgcgccacgctg
ccgttcgatatcgatggcgtggtgtacaaggtcaatgccgtcgccgaccagcatcagctc
ggctttgtgtcgcgcgcaccgcgcttcgcgattgcgcacaagtttccggccgaggaagca
ctgaccgtggtcgaggcgatcacggtccaggtcggccgcaccggcgccgtgaccccggtc
gcccgcctgcagccggtgttcgtcggcggcgtgaccgtgaccaatgccacgctgcacaat
gaagacgaggtccggcgcaaggacatccgcatcggcgacaccgtgatcgtccgccgcgcc
ggcgacgtgatcccggaagtcgtggccgccgtcgccgaccgccggccggccgatgccgca
gaattcgtcatgccgacgcaatgcccggtctgcggctcgcatatcgtccgcgccgaggac
gaagccatcgcgcgctgctccggcgggctgtactgctcggcccagcgcaagcaggcgctg
cagcacttcgccagccggcgggcactggatatcgagggcctgggcgaaaaactggtcgac
cagctggtggaaaagcagtgggtgaccacgccggccgatctgttccggctgcaggccgat
cagctggccggcctcgaccgcatgggcgacaagagcgcgcagaacctggtacaggcgatc
gacgtcgcccgccatacccgtttcgagcgctttatctacgcgctcggcatccgcaatgtc
ggcgagtcgaccgcgcgcgacctggcgcgccacttcggcaccctggatgcgctgatggcc
gccgacgagaccgcactggtcgcggtgccggatgtcggcccgatcgtcgcgcgctcgatc
gtcgacttcttcgccgagtcgcataaccgcgacgtcgtcgctgacctgtgtgcgcttggc
gtcgactggccgcaggtcgcagccactacggacagctacgtcgacggcgtggccggcaag
accttcgtgctgaccggcaccctgcccaccctgacccgcgatgacgccaaggcacgcatc
gaggccgccggcggcaaggtggccggcagcgtgtcgaaaaagaccgactatgtggtcgcc
ggcgacgcggcgggcagcaagctggacaaggcacaggcgctcggcgtggccattctcgac
caggacgggctgctggcactgcttgggtcatag
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