Mariprofundus aestuarium: Ga0123461_2276
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Entry
Ga0123461_2276 CDS
T05212
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
maes
Mariprofundus aestuarium
Pathway
maes03030
DNA replication
maes03410
Base excision repair
maes03420
Nucleotide excision repair
maes03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
maes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ga0123461_2276
03410 Base excision repair
Ga0123461_2276
03420 Nucleotide excision repair
Ga0123461_2276
03430 Mismatch repair
Ga0123461_2276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
maes03032
]
Ga0123461_2276
03400 DNA repair and recombination proteins [BR:
maes03400
]
Ga0123461_2276
Enzymes [BR:
maes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Ga0123461_2276
DNA replication proteins [BR:
maes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ga0123461_2276
DNA repair and recombination proteins [BR:
maes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Ga0123461_2276
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ga0123461_2276
MMR (mismatch excision repair)
DNA ligase
Ga0123461_2276
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ga0123461_2276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
DUF7560
RUBY_RBDX
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ATX80679
UniProt:
A0A2K8L381
LinkDB
All DBs
Position
complement(2330121..2332151)
Genome browser
AA seq
676 aa
AA seq
DB search
MESSKTTADSEDLRQRITLLRNEIRGHNYRYYTLDAPQITDAEYDLLLRELDSLESELGE
PVPDDSPTRIVGAPPSATFTSRVHGEPLLSLANAFDEEEVEAFVHRAAEGLGDVELSFIS
EPKIDGLAVNLRYEQGVLVVAATRGDGISGEDVTDNVRTIAGIPWHLKTNGDLTLPPVLE
VRGEVYMSRRSFAALNEQRDAEGQPPFANPRNAAAGSLRQLDARVTAQRKLGFFAYGVGL
GGRALASSQSELLILLQGFGFAAQQTEMASSVAELLEGYHRLLEQRPNLAYEIDGIVYKL
DSYELQERLGAVARSPRWAIAHKFPAEEVTTSVRDIIWQVGRTGVITPVADMEPVAVGGV
VVSRATLHNIDELQRKQVYTGATVVVRRAGDVIPEVVRTLNVDDSARKPVIPDECPVCGA
SVFRIEGEVAIRCSGGLSCSAQLKERLRHFVSRGAMDIEGMGDKLVARLVDEGMLKSIAD
VYELDYAQLAGWQGVGEKKITNLQAALEVSKQRPLARFLHALGIRHVGSATGASLASHFG
NLDAVMAADQESLLAVPDIGPEVAASICSFFGEQHNRDVIHRLLRAGVEPPAAQVAATGH
PLAGKTVVLTGSFEAVNRRVAQEKLRLFGAKPTGSVSAKTDLVIAGEKAGSKLTKARELG
IEIAGEAELLAWLNWQ
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
gtggagagctcgaaaacaacagctgattcagaagatttgcgtcagcgtattacactcctt
cgcaacgaaatccggggtcataactaccgctactacacactcgatgcaccgcagatcaca
gatgccgagtacgacctgctgctacgtgaacttgactcccttgagtcagagcttggcgag
ccggtgccggatgattcaccaacccgcattgtgggtgcccctccctcagcaacattcacc
tcgcgtgtgcatggcgagccgcttctttcattggccaacgcctttgatgaggaggaggtg
gaggcctttgtgcaccgcgcagccgaggggctcggcgatgttgaactctcttttatttcc
gagccgaaaattgacgggctggctgtaaaccttcgttacgaacagggggtgttagttgtt
gctgcgacccgcggtgatggcatcagtggtgaggatgtgactgacaatgtccgcaccatt
gccggtattccctggcacctgaaaacaaacggtgatctcacacttccacccgttctggag
gtgcgcggtgaggtttacatgtccaggcgatcctttgctgcgctcaatgagcagcgtgat
gccgaagggcaacctccttttgccaatccgcgtaatgctgccgcgggttcactcaggcag
cttgatgcacgtgtaaccgcccagagaaaacttggattttttgcttatggtgttggtctt
ggcggcagggccctggcttccagtcagtctgagttgcttatactgttgcagggctttggc
tttgccgcccagcagacggaaatggcaagcagtgtggcggagctactggagggttatcac
cgcctactggagcagcgcccgaatctggcctatgagatcgatggtattgtttacaagttg
gacagctacgaactgcaggagcggttaggggccgttgcccgttcgcctcgctgggctatt
gcgcataagttccccgccgaagaggtgacgacaagcgtgcgcgatattatctggcaggtg
gggcgcaccggcgtgattacgcctgtggctgatatggagcctgtggcggtcggtggcgtc
gtggtttcgcgtgccacactgcacaatattgatgaattgcaaaggaagcaggtctatacc
ggcgctaccgttgttgtgcgccgggcgggtgatgtgattcccgaggtggtacgcaccctg
aatgtcgatgattctgcgcggaagccagtcattccagatgaatgcccggtctgcggagcc
tccgtgttcaggatcgaaggtgaggtggcgattcgctgcagtggtggcctctcctgttct
gcccagcttaaggagcgccttcgtcattttgtttctcgcggtgcgatggatatcgaaggc
atgggcgataagctggtggcccgcctcgttgatgaggggatgctgaaaagtatcgccgat
gtctatgaacttgattatgcacagcttgccggctggcagggggtgggtgagaagaagatc
accaaccttcaggcagcccttgaagtgagcaagcagcgtccgctggcccggttccttcat
gcccttggcattcgccatgtaggctccgcaaccggggcctcactggcttcacactttggc
aatcttgatgcagtgatggcagcagatcaggagtcgcttctggccgtgcctgatattggc
cctgaggtggcggccagtatctgcagcttttttggggagcagcacaatcgtgatgtgata
cacagactgttgcgtgcaggtgtagagcctccagccgcacaggtagctgcgaccggccac
ccgctggcgggaaaaaccgtggtgctgaccggaagctttgaggccgtgaacaggcgtgtg
gcgcaagaaaagttacgtttgtttggggccaagccaaccggctcggtctcggcaaaaaca
gacctggtgattgccggggagaaagcgggctccaagctcaccaaggcgcgcgagctgggc
attgagatagccggtgaagcagagttgctggcttggttaaattggcagtag
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integrated database retrieval system
