Microbulbifer agarilyticus: Mag101_06705
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Entry
Mag101_06705 CDS
T04709
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
maga
Microbulbifer agarilyticus
Pathway
maga03030
DNA replication
maga03410
Base excision repair
maga03420
Nucleotide excision repair
maga03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
maga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Mag101_06705 (ligA)
03410 Base excision repair
Mag101_06705 (ligA)
03420 Nucleotide excision repair
Mag101_06705 (ligA)
03430 Mismatch repair
Mag101_06705 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
maga03032
]
Mag101_06705 (ligA)
03400 DNA repair and recombination proteins [BR:
maga03400
]
Mag101_06705 (ligA)
Enzymes [BR:
maga01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Mag101_06705 (ligA)
DNA replication proteins [BR:
maga03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Mag101_06705 (ligA)
DNA repair and recombination proteins [BR:
maga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Mag101_06705 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Mag101_06705 (ligA)
MMR (mismatch excision repair)
DNA ligase
Mag101_06705 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Mag101_06705 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
5_3_exonuc
PTCB-BRCT
AphA_like
Motif
Other DBs
NCBI-ProteinID:
AQQ67357
UniProt:
A0A1Q2M505
LinkDB
All DBs
Position
1681289..1683325
Genome browser
AA seq
678 aa
AA seq
DB search
MTKTIPPEAQQRAQQLHDILNRANYEYYVLDAPDLPDAEYDRCLRELQQLEDSYPQLVSS
DSPTQRVGAEPLAAFTQIRHEMPMLSLDNAFSDEDMEDFDRRIRERLNSAEPVEYACEPK
LDGIAVSLLYRKGLLERAATRGDGTVGEDITQNVRTILSIPLKLLADDVPEVLEVRGEIY
MPKAGFDALNEKARAAGEKLFVNPRNAAAGSLRQLDSRITAQRPLEMCAYSVGLVEGGEL
PERHSDILAQLNLWGFRINAEMAVAENIQQCIDYHRKLGEKRAELPYDIDGIVFKVNSIP
LQKRLGFVARAPRWATAYKFPAQEEMTQLLDVEFQVGRTGAVTPVARLQPVFVGGVTVSN
ATLHNRDEIERLGVKIGDTVIIRRAGDVIPQVVSVVESRRPEDARDIEFPTHCPVCDSPV
EATPGEAVARCSGGLICSAQRKQAIKHFASRKAMDIDGLGDKLVEQLVDEGLLHSVSGLY
HLSLEPLMGLERMGEKSAQNLLDALERSKDTTLPKFLYALGVREVGEATARNLARHFGDL
DHLMQADSEALQQVEDVGPVVAHYVAEFFEQAHNLEEVAALQQAGVHWEAEVQETGSQPL
AGQTWVLTGKLETLSRSEAKDYLQRLGAKVAGSVSANTHMVVAGPGAGSKLNKAQELNLP
VLDEEGLMAKLREWGVEI
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaacgattcccccggaagcccagcagcgcgctcagcagctgcacgatatcctt
aatcgagcaaactacgaatactacgtgctggacgcaccggatttgccggatgcggagtat
gaccgctgtctgcgcgagctacagcagctggaagattcctacccgcaactggtctccagt
gattcgccaactcagcgtgtcggcgcggaaccactggcggcgtttacccagattcgtcat
gaaatgcccatgctctcgctagacaacgcgtttagtgatgaagatatggaagattttgat
cgccgtattcgcgagcgcctgaacagcgcggaacccgtagagtacgcctgtgagcccaag
ctcgacggtattgcagtcagtttgctttaccgcaagggattactggagcgcgcggctacg
cggggtgacggtactgtcggtgaagatattacccagaatgtgcgcaccatcctctcgatc
ccgctgaaattgcttgccgatgatgtaccggaagtacttgaagtgcgcggcgaaatttat
atgcccaaggctggctttgatgcgcttaatgaaaaggcaagggctgcgggtgaaaagctt
tttgtgaacccgcgtaacgctgccgccggtagcctgcgtcagttggattcccgtattacc
gcgcaacgccccctggagatgtgcgcctacagcgtggggctggtggaggggggtgaatta
cccgagcgccactcggacattctcgcgcagctcaatctctggggctttcggattaacgcg
gaaatggccgtggctgaaaatattcagcagtgtattgattaccaccgcaagcttggcgaa
aagcgcgctgagctgccgtacgatatcgacggtatcgtgttcaaggtaaacagtattccc
ctgcaaaaacgcctgggttttgttgcgcgcgcgccgcgctgggccaccgcgtacaaattt
cccgcacaagaagaaatgacccagctgttggacgtggagttccaggtagggcgtaccggc
gcggttaccccggtggcgcgcttacagccggtatttgttggtggtgttacggtttccaac
gccacactgcacaatcgcgatgaaatcgaacgtcttggcgtgaaaataggcgatacggta
attatccgtcgcgcgggtgacgtgatcccacaggtggtttctgtggttgagagtcgtcgt
cctgaggacgcccgcgatatcgaatttcccacccactgtcctgtgtgtgattccccggtg
gaggcaacgccgggcgaggccgttgcccgttgcagcggtggcctgatctgtagtgcgcag
cgcaagcaggcaatcaagcattttgcctcgcgcaaggcgatggatatcgatggtctgggg
gacaagctggtggaacagcttgtcgatgaagggcttttgcactccgtttccgggctctat
cacctgtctctggagccgttgatgggactggagcgcatgggggagaagtccgcacagaat
ttgctggatgcgctggaacgcagtaaagacaccacactgcccaagttcctgtatgccctc
ggcgtacgcgaagtgggtgaggccaccgcgcggaatttggcccgtcactttggtgatctg
gatcacctgatgcaggcggatagcgaagccctgcagcaggtggaagatgtggggccggtg
gttgcgcactatgtggccgagttttttgagcaggcacacaatctcgaagaggtcgctgca
ttgcagcaggcgggcgtgcactgggaagcagaagtccaggaaaccggcagtcaaccgctt
gcggggcaaacctgggtgctcacgggcaaactcgagaccctgtcgcgcagtgaagctaaa
gactatctgcagcgtttgggggccaaggtggccggcagtgtttctgcgaacacgcacatg
gtggttgcggggcccggagctggttcaaaattgaacaaagcacaagaattgaacttgcca
gtgctcgatgaagaagggctaatggcgaagctgcgggagtggggcgtcgaaatttaa
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