Magnetospirillum sp. XM-1: XM1_0880
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Entry
XM1_0880 CDS
T04231
Symbol
gdhB
Name
(GenBank) NAD-specific glutamate dehydrogenase
KO
K15371
glutamate dehydrogenase [EC:
1.4.1.2
]
Organism
magx
Magnetospirillum sp. XM-1
Pathway
magx00220
Arginine biosynthesis
magx00250
Alanine, aspartate and glutamate metabolism
magx00430
Taurine and hypotaurine metabolism
magx00910
Nitrogen metabolism
magx01100
Metabolic pathways
magx01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
magx00001
]
09100 Metabolism
09102 Energy metabolism
00910 Nitrogen metabolism
XM1_0880 (gdhB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
XM1_0880 (gdhB)
00220 Arginine biosynthesis
XM1_0880 (gdhB)
09106 Metabolism of other amino acids
00430 Taurine and hypotaurine metabolism
XM1_0880 (gdhB)
Enzymes [BR:
magx01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.1 With NAD+ or NADP+ as acceptor
1.4.1.2 glutamate dehydrogenase
XM1_0880 (gdhB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_GDH_CD
GDH_C
GDH_ACT1
GDH_ACT2
GDH_HM3
GDH_HM1
GDH_ACT3
GDH_HM2
Motif
Other DBs
NCBI-ProteinID:
CUW37949
UniProt:
A0A0U5MDL0
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All DBs
Position
I:826332..831146
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AA seq
1604 aa
AA seq
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MEISAYLDRRIAELSETLAKAGAERLIRAYAGGFPLADLAEAEPEMVYGAALGLFAFMRE
RKPGTPAIRVFDPDLDRHGWVSSHSVVEIVNDDMPFLVDSVAMELARRGIKVHLLVHPVV
RADRDGAGGLVRVTVNGDGALQESLMHVEIDRQPAPVQADLAASLADVLEQVRQAVADWR
RMLDTLWAGVTEFEATSAKVPADEKQEALAFLEWLADNHFTFLGYRRFDLSKGVAADPAS
GLGILSDPQAHVFDETLTLADMPAELRAFVQRPDPLMVTKSARHAVIHRPVRMDIIGLKQ
FDAKGRVVGLHAFLGLFTSAAYNDRPAQIPLLRHKIARVEARAGFNRSGHDAKALTNILE
TYPRDELFQVSEDALFETSIGILHLQDRQRVAVFLRNDEFQRFVSCLVFVPRDRYDTPLR
LSITAMLEEAVGGTLDAFYTQVADLPLARLHFIIRTTPGHLPKVDAQALEVRIADAARTW
HEHLQDALIQTHGEAGGLALSRRWGRGFPASYRESHSALAAVGDVGRIQAASGGDIVLNL
YRPVEAEPHQGRLKLYRSGQPVPLSGILPMLEAMGLIVIAEMPHEIVPESGPDGTVWIHD
FEVESADGGPLDVAERRDLFHDALAAVWRGDFESDGFNRLVLSAGLSWREIMVLRAYTKY
LRQAGITYSQAYIEQALAGNADMTAALVQLFLAGFDPKGDPGKALAAEAILLAGLDKVVS
ADDDRILRRFLNLIRSTLRTNYFQADAAGRPKAYLSFKLDSRAVDELPAPRPMVEVFVYS
PRVEAIHLRGGKVARGGIRWSDRREDFRTEILGLMKAQMVKNAVIVPVGAKGGFVVKKPP
ATGGREAYLAEGIECYKTLMRGLLDLTDNLTPEGVKPPRDVVRKDGDDPYLVVAADKGTA
TFSDIANSVSLDYGHWLGDAFASGGSQGYDHKKMGITAKGAWVAVERHFREMGLDTRTQD
FTMIGVGDMSGDVFGNGLLRSPHAGLVAAFNHAHIFLDPNPDRERTFAERERLFNAVKAW
PDYDTTLISEGGGIWPRTAKTIPISPQAKERFGIEADTLTPTELIRALLKAPVDLLFLGG
IGTYVKAASESNADAGDRANDSLRVNGSEIGAKVVGEGANLGFTQLGRIEYAQEGAGGEG
GRIDTDAIDNSAGVDCSDHEVNIKILVNDLVSAGDLTPKQRDKLLAEMTEEVGALVLRDN
YLQTQALSMLQAQGPELLDAEARFMRLLEKGGRLDRGIEFLPTDETLTERAARKQGFTRP
ELAVLLAYGKIWLYDHILASELPDDPFMAIDLTNYFPTQLRDRFGHDIQRHRLRREIIAT
VVTNSIVNRVGGAFVSELMETTGHPPAQVARAYIVARDAFRMREVWRAIEELDGKVPASA
QTAMQIEANRLVERATLWVLRSMPSPFALGAGIAELSPGVRALEGAVPAILPPDAAAAVL
ARIEYFVGQGVPHDLAQRVGNLIVLASAADILRIATRQNLTIETAGRLYFAVGARFSLGW
LRASAEKLSGRGHWLKLAAAAAIEDLYGHQRDITSVVAASYPDLEPDAAVQAWLEANRAA
VERAETLLAELKAASHIDLPMIMVANRQLRTLTESGVAAPGGNG
NT seq
4815 nt
NT seq
+upstream
nt +downstream
nt
atggagatctccgcttatctggaccggcgcatcgccgaattgtccgaaaccctggccaag
gcgggggccgagcgcctgatccgcgcctatgccggcggctttcccctggccgacctggcc
gaggccgagccggagatggtctatggcgcggcgctcggcctgttcgccttcatgcgcgaa
cgcaagccgggcacgcccgccatccgggtgttcgatcccgacctcgaccgtcacggctgg
gtgtccagccattcggtggtggagatcgtcaacgacgatatgccgttcctggtggattcg
gtggccatggagctggcccggcgcggcatcaaggtacatctgctggtccacccggtggtg
cgggccgaccgtgacggggccggcggtctggtccgggtgacggtcaacggcgacggcgcg
ctgcaggaatcgctaatgcatgtggagatcgaccgccagccggcgccggtccaggcggac
ctggccgcctcgctggccgacgtgctggaacaggtccgccaggcggtggccgactggcgc
cgcatgctggacaccctgtgggcgggggtgacggaattcgaggcgacttcggccaaggtg
ccggccgacgagaagcaggaggcgctggccttcctggaatggctggccgacaaccatttc
accttcctgggctatcgccgcttcgacctttccaagggggtggccgccgatccggccagt
gggctgggcatcctgtccgacccgcaagcccatgtgttcgacgagacgctgaccctggcc
gacatgccggccgagctgcgggccttcgtgcagcggcccgaccccctgatggtcaccaaa
tcggcccgccacgcggtgatccaccgtccggtgcgcatggacatcatcgggctgaagcaa
ttcgacgccaagggcagggtggtggggctgcacgcctttctcggcctgttcacctcggcc
gcctataacgaccgcccggcccagattccgctgctgcgccacaagatcgcccgggtcgag
gcccgggccggcttcaacaggtccggccacgacgccaaggcgctgaccaatatcctagag
acctatcccagggacgagctgttccaggtgtccgaggacgcgctgttcgagaccagcatc
ggcatcctgcacctgcaggaccgccagcgggtggcggtgttcctcaggaacgacgagttc
cagcgctttgtctcctgcctggtgttcgtgccgcgcgaccgctacgacacgccgctgcgc
ttgagcatcaccgccatgctggaagaggcggtgggcggcacgctggacgccttctacacc
caggtggccgacctgccgctcgcccggctgcatttcatcatccgcaccacccccggccat
ctgcccaaggtggatgcccaggcgctggaggtccgcatcgccgacgcggcgcgcacctgg
cacgagcatctacaggacgccctgatccagacccatggcgaggccggcgggctggcgctg
tcgcggcgctggggccggggcttccctgcctcctaccgcgaaagccacagcgcgctggcg
gcggtgggcgacgtgggccgcatccaggcggcgtcgggcggcgacatcgtgctcaatctc
taccgcccggtggaggccgagccgcaccagggccgcctcaagctgtaccgttcgggtcag
ccggtgcccctgtcgggcatcctgcccatgctggaagccatggggctgatcgtcatcgcc
gagatgccccacgagatcgtcccggaatccggtcccgacgggacggtgtggatacacgat
ttcgaggtggaaagcgccgatggtgggccgctggacgtggccgagcggcgcgacttgttc
cacgacgccctggcggcggtgtggcgcggcgatttcgaaagcgacggtttcaaccggctg
gtgctgtcggccggcctgtcgtggcgcgagatcatggtactgcgcgcctacaccaagtat
ctgcgccaggccggcatcacctacagccaggcctatatcgagcaggccctggccggcaac
gccgacatgaccgccgccctggtccagctgtttctcgccggcttcgaccctaagggagat
ccgggcaaggcgctggcggccgaggctattctgctggccggactggacaaggtggtcagc
gccgacgacgaccgtatcctgcgccgcttcctcaacctgatccgttccaccttgcgaacg
aattacttccaggccgatgcggccggccggcccaaggcctatctgtccttcaagctggat
tcccgggcggtggacgagttgccggcgccgcggcccatggtcgaggtgttcgtctattcg
ccccgggtcgaggccatccacttgaggggcggcaaggtggcgcgcggcggcatccgctgg
tccgaccgccgcgaggatttccgcaccgagatcctgggcctgatgaaggcccagatggtc
aagaacgcggtgatcgtgccggtgggcgccaagggcggcttcgtggtcaagaagcccccg
gcgacgggcgggcgcgaggcttatctggccgagggcatcgagtgctacaagaccctgatg
cggggtcttctggaccttaccgacaacctgaccccggaaggggtgaagccgcccagggac
gtggtgcgcaaggacggcgacgacccctatctggtggtggccgccgacaagggcaccgcc
accttctccgacatcgccaattcggtttccctggattacggccactggctgggcgacgcc
ttcgcctcgggcgggtcccagggctacgaccacaagaagatgggcatcaccgccaagggc
gcctgggtggcggtggagcgccacttccgcgaaatgggactcgacacccggacccaggac
ttcaccatgatcggggtgggcgacatgtcgggcgacgtgttcggcaacgggttgctgcgc
tcgccccatgccgggctggtggcggccttcaaccatgcccacatctttctcgatcccaat
cccgaccgggaaaggaccttcgccgagcgcgagcggctgttcaacgccgtcaaggcctgg
cccgattacgacaccacgctgatttccgaaggcggcggcatctggccccggacggccaag
accatccccatctctccccaggctaaggaacgtttcggtatcgaagccgataccctgacc
cccaccgaactgatccgtgccctgctgaaggcccccgtcgacctgctgttcctgggcggt
atcggcacttatgtgaaggcggcaagcgagagcaacgccgacgccggcgaccgcgccaac
gattcccttcgcgtcaacggctccgagatcggggccaaggtggtgggcgagggcgccaat
ctgggcttcacccagctgggccgtatcgaatacgcgcaagaaggagccggcggcgaaggc
gggcgcatcgacaccgacgccatcgacaattccgccggggtggattgctcggaccacgag
gtcaacatcaagattctggtcaacgatctggtgtcggccggcgaccttaccccgaagcag
cgcgacaagctgctggccgagatgaccgaggaagtgggcgccctggtgctgcgcgacaat
taccttcagacccaggcgctttccatgctgcaggcccaggggcccgaactgctggacgcc
gaggcgcgcttcatgcgccttctggaaaagggcggtcgtctcgaccggggcatcgagttc
ctgcccaccgacgagacgctgaccgagcgcgccgccaggaagcagggctttacccgcccc
gaactggcggtgctgctggcctatggcaagatctggctctacgaccacatcctggcctcg
gagctgcccgacgacccgttcatggccatcgacctcaccaactatttccccacccagctc
cgggatcgtttcggccacgacatccagcgccaccggctgcggcgcgagatcatcgccacg
gtggtgaccaattccatcgtcaaccgggtgggcggggccttcgtctcggaactgatggag
accaccggccatcctcccgcccaggtggcccgggcctatatcgtggcccgcgacgccttc
cgcatgcgcgaggtctggcgggccatcgaggaactggacggcaaggtcccggcctcggcc
cagaccgccatgcagatcgaggccaaccggctggtggaacgcgccaccctatgggtgctg
cgctccatgccgtcgcccttcgcgctgggggcgggcatcgccgaactgtcgcccggggtc
cgtgcgctggaaggcgcggtgccggccatcctgccgcccgacgcggcggcggccgtgctg
gcccgcatcgagtatttcgtcggccagggcgtgccccacgatctggcccagcgggtgggc
aacctgatcgtgctggcttcggccgccgacatcctgcgcatcgccacccgccagaacctc
accattgagacggcggggcggctgtatttcgcggtgggggcgcggttctcgctgggctgg
ctcagggcctcggccgagaaactgtcggggcgcggccactggctgaagctggcggcggcg
gcggccatcgaggacctctacggccaccagcgcgacatcaccagcgtggtggcggcctcc
tatcccgacctcgagcccgacgcggcggtgcaggcctggctggaggccaaccgggcggcg
gtggaacgggccgagaccctgctggccgagctgaaggcggcctcccacatcgacctgccc
atgatcatggtggccaaccggcaattgcggaccctgaccgagtcgggtgttgcggcgccg
ggcgggaacggctaa
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