Mycoplasmopsis agalactiae 5632: MAGa2950
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Entry
MAGa2950 CDS
T01192
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mal
Mycoplasmopsis agalactiae 5632
Pathway
mal03030
DNA replication
mal03410
Base excision repair
mal03420
Nucleotide excision repair
mal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MAGa2950 (ligA)
03410 Base excision repair
MAGa2950 (ligA)
03420 Nucleotide excision repair
MAGa2950 (ligA)
03430 Mismatch repair
MAGa2950 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mal03032
]
MAGa2950 (ligA)
03400 DNA repair and recombination proteins [BR:
mal03400
]
MAGa2950 (ligA)
Enzymes [BR:
mal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MAGa2950 (ligA)
DNA replication proteins [BR:
mal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MAGa2950 (ligA)
DNA repair and recombination proteins [BR:
mal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MAGa2950 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MAGa2950 (ligA)
MMR (mismatch excision repair)
DNA ligase
MAGa2950 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MAGa2950 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
RNA_ligase
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH_5
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
CBH40510
UniProt:
D3VQB6
LinkDB
All DBs
Position
336436..338400
Genome browser
AA seq
654 aa
AA seq
DB search
MQKEKAKELIKSLVETINQWNYEYYQLNKPSVSDLEYDKALLELEKLEKEHPDLILNNSP
TFRIGSFASEKFTKFVHQKPMLSLAKAYNYDDINSFINNISKIVPTENINFNIEPKIDGL
SIALHYKQGKLVKAATRGDGSEGEDVTENIYQIKSIPKLINYLNDLEVRGEVFITKNDFK
KINESNNFANARNAASGTLRQLDANIVAERNLSAFLYEIVEPEKHGIYYQHEALEFMKNL
NFPTNPFSKVVEIEELEESINDFAEIKNKLDYDADGLVIKLDDLQMWDKLGKTSKFPKHS
IAFKYDVEIASSKIIDILTSVGRTGKITYIANILPVLLNQTTVKAATLHNHNFIKDMNIN
INDEVNIIKAGEIIPKVISLKEEKNYVDYYKKATNCPSCGSQLVEFEGIVDQFCTNDECP
DKNINNIYHFASRNCLNIVGLGLSTVKDFYPKFIKNIKDIFDLHRHRAELIKLPRYRDLK
VDNILNSIESAKNKKFSKVIFALGIKHIGQRAAKLIADNYANFAELLDDHNLLKLQNTKN
IGPKIIESLIEFISSPANQDLLAFLDAIFNYEGKAKVISTILSGYTFVITGVLSEPRSHF
VKLIEEHSGNVSSAISSKTSYLLAGSDAGSKLEKAYKTGTKVINEEQFYDLIKQ
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaagaaaaagcaaaagagttaattaagtcactagttgaaacaataaatcaatga
aattatgaatattatcaattaaataagcctagcgtttctgacttagaatatgataaagct
ttgttagagctagaaaaattagaaaaagagcatcctgatttaattcttaataacagccca
acttttagaattggctcttttgcttctgaaaaatttactaaatttgtgcaccaaaaacct
atgttatctttagctaaagcctataactatgatgatattaatagttttataaacaatatt
tcaaaaattgtaccgactgaaaacataaactttaatattgaacctaaaattgatggacta
agtatcgccttgcactataaacaaggcaaattggtcaaagcagccactagaggagatggc
tctgaaggagaagatgttactgaaaacatttaccaaattaagtcaattcctaagcttatt
aattacttaaatgatctagaagtgcgtggcgaagtttttataactaaaaatgattttaaa
aaaataaatgaaagcaataattttgctaatgcaagaaatgctgctagtggtaccttaaga
caattagatgctaatattgttgctgaaagaaatcttagtgcatttttatatgaaatagtt
gaacctgaaaagcatggcatttattatcaacatgaagcgcttgagtttatgaaaaattta
aatttcccaaccaatcctttttcaaaagttgtagaaattgaagaattagaagaatctatt
aatgattttgccgaaataaaaaacaaattagactatgatgcagatggattggtcattaag
cttgatgatttacaaatgtgggacaaattaggcaaaacttccaagttccccaagcactca
attgcttttaaatatgatgttgaaatagcttcaagcaaaataattgatatattaacttcg
gttggaagaactggaaaaattacctatattgcaaacattttacctgtgttattaaatcaa
accacagttaaagcagctacattacataatcataattttattaaggatatgaacatcaat
attaatgatgaagttaatattataaaagcaggtgaaatcatacctaaagttataagctta
aaagaagagaaaaattacgtggattactataaaaaagccacaaactgtccttcttgtggc
tcacaattagttgaatttgaaggcattgttgatcagttttgtactaatgatgagtgtcct
gataaaaatattaataatatttatcattttgcttctagaaactgccttaatattgtaggc
ttaggcttaagcactgttaaggatttttatcctaaatttataaaaaatattaaagatatt
tttgacttacacaggcatagagctgagctaattaagctcccaagatatagagacttaaag
gttgataacattttaaatagcattgaaagtgcaaaaaataaaaaatttagcaaagttata
tttgctttaggcattaaacatatagggcaaagagctgctaaattaattgctgataactat
gctaattttgcagaactactagatgatcataatttattaaagctacaaaatactaaaaat
attggtcctaaaataattgagagcttaattgaatttatttcaagtccagcaaaccaagat
ttactagcttttttggatgcgatttttaattatgagggtaaagcaaaagttataagtact
attttaagcggctatactttcgttataactggggtcttatctgagccaagaagtcatttt
gtaaaactaatagaagaacacagtggaaacgtttccagtgcaatatcaagtaaaactagt
tatttattagctggttctgatgcaggaagtaagttagaaaaagcctataaaacaggcaca
aaagtcataaatgaagaacaattttatgatcttataaaacagtag
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