Pseudoduganella albidiflava: EYF70_10010
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Entry
EYF70_10010 CDS
T05903
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mali
Pseudoduganella albidiflava
Pathway
mali03030
DNA replication
mali03410
Base excision repair
mali03420
Nucleotide excision repair
mali03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mali00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EYF70_10010 (ligA)
03410 Base excision repair
EYF70_10010 (ligA)
03420 Nucleotide excision repair
EYF70_10010 (ligA)
03430 Mismatch repair
EYF70_10010 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mali03032
]
EYF70_10010 (ligA)
03400 DNA repair and recombination proteins [BR:
mali03400
]
EYF70_10010 (ligA)
Enzymes [BR:
mali01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EYF70_10010 (ligA)
DNA replication proteins [BR:
mali03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EYF70_10010 (ligA)
DNA repair and recombination proteins [BR:
mali03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EYF70_10010 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EYF70_10010 (ligA)
MMR (mismatch excision repair)
DNA ligase
EYF70_10010 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EYF70_10010 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QBI01139
LinkDB
All DBs
Position
2375877..2378222
Genome browser
AA seq
781 aa
AA seq
DB search
MSKDLDSPAARAAWLTAELNRHLHAYHVLDAPTIPDAEYDKLFAELQRLEQEHPELALPD
SPTQRVGAPPLGQFAAVTHAVPMLSLNNGFTDEDIENFDRRVREGLDAAQVDYAAELKFD
GLAVNLRYENGVFVQAATRGDGYTGEDVSANIRTIKAIPLRLRGDGLPEVLEVRGEVLMF
KADFAAMNERQRAAGQKEFVNPRNAAAGALRQLDSRITAQRKLRFFAYGIGELVGMDMPE
THAGLLDWYADLGLPVAQEREVVQGKDGLLAFYARVGKARPAMPYEIDGVVYKVNRVEDQ
RTLGFRSRAPRFALAHKFAAEEALTTVQAIEVQVGRTGAITPVARLVPVFVGGVTVTNAT
LHNEDEVRRKDVRVGDTVIVRRAGDVIPEVLAVVLDKRPTPEPAAYVLPNTCPVCGSHVV
REEGEAVARCSGGLTCAAQRKEAIRHFAGRRMMDIEGLGDRYIDSLVECNLVHGVADLYR
LTLDDLLRMKLAADERDGTTPETVKQGKVATKWADNLLAAIEASKQPPLERLLFALGIRH
VGESTGKTLADWLGKFELVRRAPAALLRVLPDIGGTVAESIADFFAEEKNQQAIDALLAA
GVAPQGEHAPKAQLRDKLDEVALLAALGIPKLTEPRARQLLADGRTLESLAFLKVFTVFG
LPAAVAASLEEWMAVPANRDQLMALSALRAELLAQLPEAAAAGYEGPMAGKTFVLTGTLP
TLSRDAAGAMIEAAGGKVSGSVSKKTTYVVAGAEAGSKLAKAEELGVTILDEAGLLALLG
K
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagacctcgatagccccgccgcacgggccgcatggctgacggcggaactgaac
cggcacctgcacgcctaccacgtgctcgacgcgcccaccattccggacgccgagtacgac
aagctgttcgccgagctgcagcgcctcgaacaggaacaccctgaactggcgctgcccgat
tcgcccacccagcgggtcggcgcgccgccgctggggcagttcgccgccgtcacgcacgcg
gtgccgatgctgtcgctgaacaatggcttcacggacgaggatatcgagaacttcgaccgc
cgcgtgcgcgaggggctcgatgcggcgcaggtggactatgctgccgagctgaagttcgac
ggcctggccgtcaacctgcgctacgagaacggcgtgttcgtgcaggcggccacgcgcggc
gatggctacacgggcgaggacgtgtcggccaatatccgcaccatcaaggccattccgctg
cgcctgcggggcgacgggctgcccgaagtgctggaagtgcgcggcgaggtgctgatgttc
aaggccgatttcgcggccatgaacgagcggcagcgcgcggccggccagaaggaattcgtc
aatccccgcaatgccgccgccggtgcgctgcgccagctcgattcgcgcatcacggcgcag
cgcaagctgcgcttcttcgcctacggcatcggtgaactggtcggcatggacatgccggaa
acgcacgcggggctgctggactggtatgccgacctgggcctgccggtggcgcaggagcgc
gaagtggtgcagggcaaggatggcttgctggccttctatgcgcgggtcggcaaggcgcgc
ccggccatgccatacgagatcgatggcgtggtctacaaggtcaaccgcgtggaagaccag
cgcacgctgggattccgttcgcgcgcgccccgtttcgcgctggcgcacaagttcgcggcc
gaggaagccctgaccacggtgcaggcgatcgaagtgcaggtgggccgcaccggcgccatc
acgccggtcgcccgcctggtacccgtgttcgtcggcggcgtgaccgtcaccaacgccacg
ctgcacaacgaggatgaagtgcgccgcaaggacgtacgggtgggcgataccgtcatcgtg
cggcgcgccggcgacgtgatccccgaggtgcttgccgtggtgctcgacaagcgccccacg
cccgagccggcggcgtacgtgctgcccaacacctgccccgtctgcggctcgcacgtggtg
cgcgaggaaggcgaggccgtggcgcgctgctcgggcgggctgacctgcgccgcgcagcgc
aaggaggcgatccgccacttcgccggccgccgcatgatggatatcgaaggcctgggcgac
cgctacatcgacagcctggtcgagtgcaacctggtgcacggcgtggccgacctgtaccgg
cttacgctggacgacctgctgcgcatgaagctggccgccgatgaacgcgacggcaccacg
ccggaaaccgtcaagcagggcaaagtggccaccaagtgggcggacaacctgctggccgcc
atcgaagcgagcaagcaaccgccgctggaacggctgctgttcgcgctgggcatccgccac
gtgggcgaatcgaccggcaagacgctggccgactggctcggcaagttcgaactggtgcgc
cgcgccccggccgcgctgctgcgcgtactgccggacatcggcggcaccgtggccgaatcg
atcgccgacttcttcgccgaggaaaagaaccagcaggccatcgacgcgctgctggccgcc
ggcgtggcgccgcagggcgagcatgccccgaaggcgcagctgcgcgacaagctcgacgaa
gtggcgctgctggccgcgctgggcatcccgaaactgacggagccgcgggcgaggcagctg
ctggccgatggccgcacgctggaatcgctggcgttcctgaaggtgttcaccgtgttcggc
ttgccggccgccgtcgccgcgtcgctggaagagtggatggcggtgccggccaaccgggac
cagctgatggcgctgtccgcgctgcgcgccgaactgctggcgcaactgccggaagcggcg
gcggccggctacgaaggcccgatggcgggcaagacattcgtcctcaccggcacgctgccc
acgctgtcgcgcgacgccgccggcgccatgatcgaagcggcgggtggcaaggtctccggt
tccgtgtcgaagaagaccacctacgtggtggccggcgcggaagcgggcagcaagctggcg
aaggccgaggaactgggcgtcacgatcctggacgaagcgggcctgctggcgctgctgggc
aaataa
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