Marinobacter alkaliphilus: PBN92_10775
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Entry
PBN92_10775 CDS
T08753
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mall
Marinobacter alkaliphilus
Pathway
mall03030
DNA replication
mall03410
Base excision repair
mall03420
Nucleotide excision repair
mall03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mall00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PBN92_10775 (ligA)
03410 Base excision repair
PBN92_10775 (ligA)
03420 Nucleotide excision repair
PBN92_10775 (ligA)
03430 Mismatch repair
PBN92_10775 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mall03032
]
PBN92_10775 (ligA)
03400 DNA repair and recombination proteins [BR:
mall03400
]
PBN92_10775 (ligA)
Enzymes [BR:
mall01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PBN92_10775 (ligA)
DNA replication proteins [BR:
mall03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PBN92_10775 (ligA)
DNA repair and recombination proteins [BR:
mall03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PBN92_10775 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PBN92_10775 (ligA)
MMR (mismatch excision repair)
DNA ligase
PBN92_10775 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PBN92_10775 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DUF4874
Motif
Other DBs
NCBI-ProteinID:
WBU39592
LinkDB
All DBs
Position
complement(2373301..2375337)
Genome browser
AA seq
678 aa
AA seq
DB search
MSQVSADIQQRVEQLRAALDDHNYYYYVLDDPRIPDAEYDRLFRELQTLEADYPELATDN
SPTRRVGSAAETSFEEITHRLPMLSLDNAFSDDELRDFDRRVRDRLATEDPVEYVCEPKL
DGLAVSLHYEQGVLTRAATRGDGYTGEDITANIRTIPSVPLTLRGDDYPDLVEVRGEVYM
PKAGFEQLNRRLAEQGEKPFVNPRNAAAGSLRQKKSTVTAKRPLELCAYSMAVTDESLLP
ETHWESLQRVRGWGFRINPEMRKAKGVEACLEAYQELMAKRDTLPYEIDGIVFKVNRLDL
QQQLGFVSRAPRWAIAHKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNA
TLHNMDEIRRLDVHIGDTVFIRRAGDVIPQVVKVVPEKRPKGAAEVVLPSQCPVCDSDIV
QIEGEAVARCSGGLYCPAQRKEAIRHYASRKAMDIEGLGDRLIEVLVDEGMVNTVADLYR
LTKFQLSSLDRKGDKSAGNLVAAIDRARKPVLWRFLYALGIREVGEATAKSLASHFGTLE
AISAADDEALQAVPDVGPIVAGHIRSFFDQPHNQETLQALKDTGVSWQEEQVVPAEAKPL
AGETWVLTGTLSQMTRDQAKEKLEKLGAKVAGSVSKKTACVVAGEAAGSKLTKAEQLGVP
VLDEEGLLALLEEHGVAG
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagccaggtttctgccgatatccagcagcgcgtggaacagttgcgcgctgccctggac
gatcacaattactactattacgttctggatgaccccaggatacccgatgctgaatacgat
cggctgttccgtgaactccagacactggaagcggactacccggaacttgccacagataac
tcgcctacccggcgggtcggcagtgccgcggaaaccagctttgaagaaatcacccatcga
ttgcccatgctgtcattggacaatgcgttcagtgacgacgagctccgtgatttcgaccgc
cgagtgcgtgatcgcctggcaaccgaggatccggtggaatatgtctgtgagcccaagctg
gatggccttgcggtcagcctgcactatgagcagggtgtattaactcgggccgccacccga
ggcgacggttataccggtgaggatatcacggccaatatacgcaccattccgtcagtcccc
ttgaccttgcggggcgacgactatccggatctggtggaagttcggggtgaagtctatatg
cccaaggcggggtttgagcaactgaaccggcgcctcgctgagcaaggcgaaaagcccttt
gtaaaccccagaaatgccgctgccggtagcctgcgccagaagaaatcaacagtcaccgcc
aagcgccccctggagctgtgtgcctacagcatggcggtcaccgacgaaagcctgctgcct
gaaacccactgggaaagcttgcagcgggttcggggctgggggtttcgtattaacccggaa
atgcgcaaagccaagggggttgaagcgtgcctcgaggcgtaccaggagctgatggccaag
cgcgacacgctgccatacgaaatagacggtatcgtgttcaaggtgaatcgcctggatttg
cagcagcagctgggctttgtgtccagggcgccccggtgggccattgcccacaaattcccc
gcccaggaagaactgaccgttattgaagatgtggagttccaggtgggcaggaccggggct
gtcacgcctgttgcccggctcaaaccggtgtttgtgggtggcgtgaccgtttccaacgca
acactccacaacatggacgagattcgccggctggatgtgcacatcggtgatacggtgttc
atacgccgcgctggagatgtcattccgcaagtggtgaaggtggttccggagaaacgcccg
aagggcgcagcggaagtggtcctgccgagccaatgcccggtctgtgactcggacatcgtc
cagatagaaggggaggcggtcgcccgttgttccggggggctgtactgccccgcccagcgc
aaggaagccattcgccattacgcctcccgcaaggccatggatatcgaaggtctgggcgac
cggctgattgaagtgctggtggatgaaggcatggtgaacaccgtcgcggacctgtaccga
ctaaccaaattccagttatccagccttgaccgtaagggggataaatcagcaggcaacctt
gtggcggccattgaccgggcccgtaagccggtgctgtggcggttcctctacgccctgggt
attcgtgaggtgggtgaggcgaccgcgaagtccctggcatcgcatttcggtacccttgag
gcaatttcagctgccgatgacgaggcgctgcaggcggtaccggacgttggtcccatcgtg
gccggccatattcgcagtttcttcgaccagccccacaaccaggaaaccctgcaggctttg
aaagacaccggggtaagctggcaggaagaacaggttgtccctgccgaggccaaacccctg
gccggcgaaacctgggtgctgaccggcaccctgtcacagatgacccgggaccaggcgaag
gaaaaactggagaagctgggagccaaggtcgcgggcagcgtttcgaagaaaaccgcctgc
gtggtggcgggtgaggctgctggctccaagctgaccaaggcagaacagctgggagtgcct
gtcctggatgaagaggggcttctcgccctcttagaggagcatggcgtagcaggctga
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integrated database retrieval system
