Megalobrama amblycephala (Wuchang bream): 125255161
Help
Entry
125255161 CDS
T08212
Name
(RefSeq) protocadherin-15-like isoform X1
KO
K16500
protocadherin-15
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
125255161
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
mamb03037
]
125255161
04515 Cell adhesion molecules [BR:
mamb04515
]
125255161
Cilium and associated proteins [BR:
mamb03037
]
Primary cilia and associated proteins
USH complex and associated proteins
125255161
Cell adhesion molecules [BR:
mamb04515
]
Cadherins
Protocadherins
125255161
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Ig_Cad99C_N
Ig_CLSTN
Cadherin_2
CDH23_a-b
Big_9
RibLong
Motif
Other DBs
NCBI-GeneID:
125255161
NCBI-ProteinID:
XP_048026146
LinkDB
All DBs
Position
LG20:complement(5949978..6215656)
Genome browser
AA seq
1727 aa
AA seq
DB search
MKMRQRSWLFKWLGIGIGVLLLTAASYSQDSEDWQYEECKLSRTGPPATIVAIDEESPNG
TLLVENMQINGRAEDPDRTISLSLRDNHDYWVILDPIKQRLYLNSTGRVLDRDPPSYIQS
IVVQVQCTNELVGTVILHEVRIVIRDRNDNTPRFQQPRYYVAINELTPVGTTIFSGFTGN
NGAVDIDDGPNGQIEYTIRYNPKDPTTNKTFDIPLTLSGSVVLRERLNYEEITRYLVIIQ
ANDRAPNPKDRLTATTTLTVDVLDGDDLGPIFLPCSLVDNTRDCKPLTYRASILELTDPS
RVNPVNVTPPIQAVDQDRNIQPPSDRPGILYSILIGKPAPYAEYFSLNRTTAELQLLKPI
SREQYQHFDLVIKAEQDNGHPLPAFANLHIEVLDENNQAPYFQVATYHGFISESAPLGTT
ISSSANLSTPLAIIALDNDIEEMKDPMVHISLDNYNSIFAVTPSGIARYLTLLRPVDHEE
QPSYAFTMIASDGVQESSPVTVNITVIDANDNTPTFPNVSYSVNVYTDMQPGDTVLQLTA
VDADEGPNGLVSYKILAGDQGHFTINDCTGVITVTPGVNLTVGRSYALTVRASDNGPSSQ
RRSSITTVYIEVLPPNNQSPPRFPQLIYSLEINEAMRTGATLLNIQAADRERDPITYTVL
RGDPNNVFEVSQTSGLLLLAKNLDREITDHYTLTVTASDGKPDGTSTATVNIVVTDVNDN
DPEFDPLLPLNLTVQEEEANAFVGQVKATDLDLGINGQVRYRLVSHTDLFRISTDGSIFT
AVPLDREERAQYDLVVQASDGAKDPRRTTITLSIKVLDVDDNSPVFSQPAYHVTLPENSP
VGMVILNISALDPDLDANVTYRIRTEEARELFSVNPLTGELMVLRSLDFEKLLPNGTTRT
FIVEAVDGGSGKMPPGLASVTVTVLDMNDFPPVFSQMLYRGVVAPNAIKGTVVTTVLAED
LDPPGTAASRVHYKVDLEQFPYSTSIFDVEENSGRVLTRVNLNEEPNTKFSLAIIAYDDG
EPMKFNKTLVEITVLQPSIIPVFTQEEYRFSPISENAPVGTVTGVILAAAINQTIVYSII
EGNEGGEFVMNNITGVISTAKPLDYESNSSYVLRVEADSMRVVSSNLRAPSKSNTAKVFI
DVQDENDHPPEFTKPFYLGGVAEDAKTFTSVLQVQALDKDTGNFSAMLYRLIIPPTTDGK
DGFVIEPFTGVIKTAIMYRNMRRSYFKFDVVATDDYGKGLSSSAQVVVSVVNQLDMQVVV
SNVPPTVVEQNKDQLIGILERYVQDQIPGAKVVVESIGPRRFGEGYEQEDYSKSDLMVYA
IDPLTNRALSRQELFKFLDGKLLDINKEFQPYLGRGGRILEIRTPDVVESVKKAVQSVGY
TEGALLALAVIIIMCCIPAILIVIITYRQFKERQAECAKTARIQMALPTGKSGGAATNNL
YEELGDSTMRGYGHQEQQQLLRPSLLRPEELSMESGIDPGQDYYTQDYYNYDHGYDLPQY
GSRRKLISPTGMYDEYGEVIMEDDGSYYYSPHESEGEYGRKKRIKLIVDREYETSSTGEE
SAPESHRNRLSNVNSHSNINGSIYLAQNGSIIRTRRVAHTNNIKLNSPVRLGKHFKKLDK
LAVTHEERIPLNSPIITGASAGEQNLTTRPSSGSLASSTTGPESIASKSNVVNDGGERTQ
NVDEQESTVDNQEVRDPLGSHSDRTQSDEEELWMGPWNNLHIPMTKL
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgcgccagaggtcgtggctctttaagtggttgggaataggcattggcgttctt
ctgctcactgctgctagctattctcaagattcagaagactggcagtatgaggagtgcaag
ctctccagaacaggcccgcctgccaccattgtagccatagatgaggagagccctaatgga
acccttctggtggagaacatgcagataaacggtagagcagaagaccctgacaggaccatc
tctttatctctacgggacaaccatgactactgggtcattctggatcccatcaagcaacgc
ctgtatctgaacagcaccggacgagttctggaccgtgatcctccctcctacattcagtcc
attgtagtgcaggttcaatgtactaatgagcttgttggcacggtgatcctacacgaagtg
cggatagtcatacgggatcgaaacgacaacaccccacgctttcagcagccacgctactat
gtagcgattaatgagttaactcctgtcggaaccaccatcttctcaggttttacagggaac
aacggggctgttgacattgatgatggtcctaacggacaaatcgaatacaccattcggtac
aaccctaaagatccgaccacaaacaagacattcgacatccctctcaccctgtcaggatcg
gtggttttgagagagaggctgaattatgaagagatcacacgctatctggtcatcattcag
gccaacgaccgagctccaaacccaaaggaccggctcaccgccaccaccacacttacggtg
gatgtgttggacggagatgacctgggccccatatttctaccttgcagcctggtagacaac
acccgtgactgcaaacctcttacctaccgtgccagcatcctggagctcacagatccgagc
cgagtaaaccctgtcaatgtgactcctcccattcaagctgtggatcaagacagaaacatc
cagccaccgtcagatcgcccgggaatcctgtactccattctcattgggaaacctgcgcca
tatgcagagtatttctcgttgaatcggactacagctgagcttcagctcctgaaacccatc
agcagagaacagtaccagcatttcgacttggtaatcaaggcagagcaggataacggacac
cctctcccagcgttcgctaatctccacattgaggtccttgatgagaacaatcaggcgccg
tacttccaggtggccacttatcatggattcatctcagagtctgctccgctgggcacaact
atctcgagcagtgccaatctctccacccccctcgccattatcgccctggataacgacatc
gaggagatgaaagatcccatggtgcacatctctctggacaactacaacagcatctttgca
gtgacgcccagtgggatagcacgctatctgacactgctgaggcctgtggaccatgaagaa
cagccgagttatgccttcacgatgattgcctcagatggagttcaggagagctctccagtc
actgttaatatcaccgtgattgatgccaatgacaacacacccaccttccccaacgtctcc
tacagtgtgaatgtttacacagacatgcaacccggggacacagtcctacagctgacagca
gtggatgctgatgaaggtcccaacgggttggtgagctacaaaatcttggctggggatcaa
ggacacttcaccatcaatgactgtacaggagtgatcaccgtgacgcccggtgtcaacctg
accgtgggccgctcctatgccctcaccgttagggcctcagacaacggaccttcatcccag
agaagaagttccatcactacagtgtatatcgaagtgctgccccccaacaaccagagccct
ccccgtttccctcagctcatatacagcctggagatcaatgaggccatgaggactggagcc
acgctgctcaacatacaggcagccgaccgtgaaagagatcccattacatataccgtcctg
agaggagatccaaacaacgtctttgaagtctcccagacgtctgggctgttgttgctggcg
aagaatctggacagagaaatcacggatcactacacgctaacggtcacagcctccgatggc
aaaccagatgggacctcgactgctacagtgaatatagtggtgactgatgtcaatgataat
gaccctgagttcgatcctctgctgccccttaatctcacagttcaagaggaagaggcaaat
gcttttgtgggtcaagtaaaggccactgatctggacctgggcattaacgggcaggtccgt
taccgactggtcagtcacacagatctcttcaggatcagcactgatggcagcatcttcaca
gctgttcctctggatcgtgaggagagggctcagtatgatttggttgtgcaggcttcggat
ggggccaaggaccctcgccgaaccaccattacactctccatcaaagtgctggacgtggat
gacaacagcccagtcttctcgcagcctgcctatcacgtcacactgccagaaaacagccca
gtgggcatggtcatcctcaatatcagtgcactggaccccgatctggatgcgaacgtcaca
taccgtatcaggaccgaggaggccagagagctgttttcagtgaaccccctcactggagag
ctgatggtgcttcgctcacttgattttgagaaactcttacctaatgggacgacacgcacc
ttcatagtggaggctgtggatggcggaagtggcaaaatgcccccggggttggcttctgtt
accgtcactgtattggacatgaacgacttcccaccagtgttcagccaaatgctgtatcgg
ggggtcgtggcacccaacgcaatcaaggggaccgtagtgaccactgtgcttgctgaggac
ctggacccaccgggtacagcggctagtcgagttcactataaagtggatttggagcagttt
ccttacagcactagtatcttcgacgtggaggagaactcaggccgtgttctcaccagggtc
aatctgaatgaggagcccaacactaaattcagtttggcgattattgcctatgatgacggg
gagccgatgaagttcaataagactctggtggagatcactgtcctgcagccatccattatt
cctgtgttcacgcaggaggagtacaggttctctccgatcagcgagaatgcccccgtggga
acggtcacaggagtcatcttggcggctgccataaaccagaccatcgtctactccatcatc
gaaggaaatgaaggcggtgaattcgtcatgaacaacatcactggagttatcagcactgcc
aagccactggactacgagagcaacagcagttacgtcctccgcgtggaagccgactccatg
agggtggtgtcgtccaacctacgagccccatccaaaagcaacacagcaaaggtcttcatt
gatgtgcaagatgagaacgaccatcctccggagttcactaagcccttttacctcggtggg
gttgcagaggatgccaagaccttcacctctgttttacaggtccaggctctggataaggac
acagggaatttcagcgccatgctgtataggctgattatcccccctactactgacggcaaa
gacggctttgttattgagcccttcacaggcgtaattaagacagccatcatgtacaggaac
atgcggcgctcctactttaaatttgatgtggttgctacagacgactacgggaagggactc
agcagcagcgctcaagtggtggtgtcagtggttaaccagctggacatgcaggtggttgta
tccaacgtgccgcccactgtagttgaacagaacaaggatcagctgattgggattttagag
cgctacgtccaggaccagatcccaggagctaaagtagttgtagagtcaatcgggccccgg
cgttttggcgagggttatgaacaggaggactactccaaatctgacctgatggtttatgca
atcgaccctctgaccaacagagctctctcaagacaggagctcttcaagtttttagatggg
aagttattggacatcaataaggagtttcagccctacctaggtcgcggaggacgcattctg
gagatccgcacaccggatgtggtggagagcgtgaagaaggcggttcagtctgttggatac
accgaaggagccctgctggccctggccgtcatcatcatcatgtgctgtatcccagccatt
cttatcgtcatcatcacctaccgacaattcaaagaacggcaggcagaatgtgcaaaaaca
gccaggatccaaatggcgcttcccaccggcaaatccggaggtgctgccaccaacaatctg
tatgaagagctcggcgacagcaccatgagaggctacgggcatcaagagcaacagcagttg
cttcggccctctctgttgagaccagaggaactctctatggagtctggcattgacccagga
caagactattatacacaggattactataactatgaccatggctatgacttgcctcagtat
ggaagtcgacggaagctgatctctcctacagggatgtatgatgaatatggagaggtaatt
atggaagatgacggcagctactactacagcccacacgaatctgagggagagtacggtaga
aaaaagaggatcaagctaattgtagaccgtgaatacgagaccagttcaactggagaagaa
agtgcacctgaatcgcacaggaaccggctatctaatgtgaacagccacagcaacattaat
gggagcatatacctggcccagaacggctcaataatccggacgcgacgggtcgcacacacc
aacaacatcaagctcaactctccagtacgactgggaaagcactttaagaaactggacaaa
cttgctgttacgcatgaagagcgaattcctttaaacagccccataatcacaggcgcctca
gcaggtgaacagaacctcacgaccaggccctcaagtgggtctctggcctccagcaccaca
ggcccagagagtatagcttcaaaatcaaatgtggtgaatgatgggggtgaaagaacacaa
aatgtggatgaacaagagtccacagtggacaatcaggaggtgagggaccctttaggatca
catagtgaccgcacccagtcagatgaggaggagctctggatgggtccttggaataacctg
cacataccaatgacaaaactgtga
DBGET
integrated database retrieval system
