Megalobrama amblycephala (Wuchang bream): 125269215
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Entry
125269215 CDS
T08212
Symbol
thbs1a
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb04115
p53 signaling pathway
mamb04145
Phagosome
mamb04148
Efferocytosis
mamb04350
TGF-beta signaling pathway
mamb04510
Focal adhesion
mamb04512
ECM-receptor interaction
mamb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
125269215 (thbs1a)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125269215 (thbs1a)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
125269215 (thbs1a)
04148 Efferocytosis
125269215 (thbs1a)
09143 Cell growth and death
04115 p53 signaling pathway
125269215 (thbs1a)
09144 Cellular community - eukaryotes
04510 Focal adhesion
125269215 (thbs1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125269215 (thbs1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mamb04131
]
125269215 (thbs1a)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mamb00536
]
125269215 (thbs1a)
Membrane trafficking [BR:
mamb04131
]
Endocytosis
Phagocytosis
Opsonins
125269215 (thbs1a)
Glycosaminoglycan binding proteins [BR:
mamb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125269215 (thbs1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
cEGF
TSP1_ADAMTS
Laminin_G_3
EGF
TSP1_CCN
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
125269215
NCBI-ProteinID:
XP_048048030
LinkDB
All DBs
Position
LG5:complement(35809696..35818159)
Genome browser
AA seq
1206 aa
AA seq
DB search
MCAEEQNISNTNTHTHIYTDTLSSERLSAGGIMILRGLVLCLLLWSSESSRHAEMLDDDT
VFDLFELTHLHKKHHGVSLVKGPDPYSPAYKILNPNLIPSVPELSFRDLIYSIQSERGFI
FTANLKQAKRTRGSLISVERTDGTGSVFEIISNGKANTVDLVYWTASGQHVVSIEDVSVA
NGHWKNITVFVQEDRAQVYVGCEEINTQELDAPIQQILSQESADIASLRIAKGAAKSDRF
MGVLQNVRFVFGTTLDAILRNRGCESSTFITDVMNFENSVNGSSPAIRTDYTGHKSKGLQ
DICGFSCDDLTSMFTELKGLGVVVKQLSNELRQVTADNSLIMNQIQIHKGVCLHNGIVYR
DKDEWTVDSCTHCTCQNSATVCREISCPLMPCANATVPDGECCPRCGTPSDAGVEDGWSP
WSEWTHCSVTCGRGVQQRGRSCDRINSNCDGTSVQTRDCYTQECDKRFKQDGGWSHWSPW
SSCSVTCGEGVITRIRLCNSPTPQMGGKDCEGDGRQTEPCQKAPCPVNGGWGPWSPWDSC
SVTCGGGLQRRHRLCNSPAPKYGGKECLGDSKGSRLCNAQLCPVDGCLSNPCFAGTKCTS
FPDGSWTCGECPVGYTGDGVHCQDIDECKEVPDACFVLNGVHQCENTEPGYNCLPCPPRY
SGQQPFGRGMEQAIANKQVCTPRNPCEDGSHDCNKNANCIYLGVFSDIMFRCECKPGYAG
NGYICGEDPDLDGWPNTDLHCVENATYHCKKDNCPDLPNSGQEDYDKDGTGDACDSDDDN
DGIPDEGDNCPFIFNPRQYDHDRDQVGDRCDNCPYDSNPEQTDTDNNGEGDACAIDIDGD
GILNEKDNCPYVYNTDQRDTDWDGVGDHCDNCPLEHNPDQIDSDSDNIGDKCDSNQDIDE
DGHQNNLDNCPYIPNANQVDHDKDGKGDACDHDDDNDGVPDDKDNCRLAFNPDQLDSDGD
GRGDVCKYDFDQDNVLDIHDVCPENFAISETDFRRFQMVPLDPTGTSQIDPNWVVRHQGK
ELLQTVNCDPGIAVGYDEFNAVDFSGTFFINTDRDDDYAGFVFGYQSSSRFYVVMWKQIT
QTYWSHTPTKAQGYSGLSIKVVNSTTGPGEHLRNALWHTGDTEGQVRTLWHDPKNIGWKD
YTAYRWHLIHRPKTGHIRVIMYEGKKVMADSGSIIDKTYAGGRLGLFVFSQEMVYFSDLK
YECRDV
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgcagaagagcagaacatctccaacacgaacacacacacacacatatatacagac
actttatcatcagagcgtctctctgcagggggaatcatgattctcagaggactcgttttg
tgtctcttattgtggagttccgagagcagcagacatgcagaaatgctggacgatgatacc
gtgttcgacctgttcgagctcactcatctgcataagaagcatcacggggtgagtttggtg
aagggacccgatccatacagccccgcgtacaagatcctgaacccgaacctgatcccctcc
gtgcccgagctctccttcagggacctgatctactccatccagagcgagagaggcttcatc
ttcaccgccaacctcaagcaagccaaacgcacccggggcagcctgatctccgtggagagg
actgacggcaccgggtccgtctttgagatcatatccaatgggaaagccaacaccgtggat
ctggtgtactggaccgcgagcggacagcatgtggtgtccatcgaggacgtgagcgtggcg
aacgggcactggaagaacatcacggtgtttgtgcaggaggatcgagctcaggtttatgtg
ggctgcgaggagatcaacactcaagaactcgatgctccgatccagcagattctgagtcag
gagagcgcggacatcgccagcctgaggatcgccaaaggagccgccaaatccgatcgcttc
atgggagttcttcagaatgtgcggtttgtttttggaacgacgctggacgcgattttacgc
aatagaggatgcgagagctcaaccttcatcacagatgtcatgaactttgagaactccgtg
aatggatccagtccggccatccgcactgattacaccggacacaagtctaaaggtctgcaa
gacatctgtggattctcctgcgacgatctgaccagcatgtttacggagctcaagggactc
ggtgtggtggtgaagcagttgtcgaacgagctccgccaagtgacagcagacaacagctta
ataatgaaccagattcaaatccacaaaggagtctgtctgcacaacggcattgtttaccga
gacaaagacgagtggacggtggacagctgcacgcactgcacatgtcagaactccgccact
gtgtgtcgtgaaatctcctgccctctcatgccctgtgccaacgccactgtcccagatggt
gaatgttgcccgcgctgcggaacaccgagtgatgcgggtgtagaagacggctggtcgccc
tggtccgaatggacacactgttcggtgacctgtggaagaggcgttcagcagcgcggacgc
tcttgtgaccggatcaacagcaactgcgatggcacgtccgtccagacgagagactgttac
acgcaagagtgcgacaaacgcttcaagcaggatggcggctggagccactggtctccctgg
tcttcctgctcagtgacgtgtggcgagggcgtcatcactcgcatccggctgtgcaactcc
ccaacgcctcagatgggtggcaaagactgcgagggagacggtcgccagactgagccatgc
cagaaggccccgtgcccagtgaatggaggttggggaccctggtcaccatgggactcttgc
tccgtcacgtgcggtggaggactgcagcgccgacaccgtttgtgtaacagccctgctccc
aaatacggtggaaaagaatgtctgggtgactccaaaggaagccgtttgtgcaacgcccag
ttgtgtcccgttgatggttgtctctctaacccgtgcttcgccggcaccaaatgcactagc
ttccccgatggctcctggacgtgcggagagtgtccggttggatacactggggatggagtc
cactgtcaagacattgatgagtgcaaagaagttcccgatgcctgttttgtgctcaatgga
gtccatcagtgtgagaacacggaaccgggctacaactgcctgccctgcccaccacgctac
tccggacaacagccctttggcagaggaatggagcaggccattgccaataaacaggtctgc
acaccaagaaacccatgtgaggacggcagccatgactgcaataagaatgccaactgcatc
tacctaggagtcttctccgacatcatgttccgctgcgaatgtaaaccaggctatgctggg
aacggttacatctgtggagaggacccagacctggacggctggccaaacacagacctccac
tgtgtggaaaacgccacctaccactgcaagaaggacaactgtcctgaccttcccaactct
gggcaagaagactacgacaaagatggaactggagatgcttgtgacagtgatgatgacaat
gatgggatccctgatgagggggacaattgcccgttcatcttcaacccaagacagtacgac
cacgaccgcgatcaagttggcgaccgatgcgataactgcccgtacgacagtaatccagaa
cagaccgacaccgacaacaatggcgagggtgatgcgtgtgccatagacatcgatggtgac
ggcattctgaatgagaaggacaactgtccatatgtgtacaacactgaccagagagacact
gactgggacggagtcggtgaccactgtgacaactgcccgctggagcacaaccctgaccag
attgactcagactctgacaacattggagacaagtgtgacagcaaccaagacatcgatgag
gatggacatcagaacaaccttgacaactgcccctacatccccaacgccaaccaggtcgac
cacgacaaggatggcaaaggagacgcctgcgatcatgacgatgacaatgatggcgtacct
gacgacaaagacaactgccgactcgccttcaacccagatcaactggattcggatggtgat
ggccgaggtgacgtttgcaaatacgactttgaccaagataacgtgctggatattcacgat
gtctgcccggagaactttgccatcagtgaaacagatttccgcaggttccagatggttccc
ctcgatcccacaggaacttcccaaatcgaccccaactgggtcgtccgtcaccagggcaaa
gaacttctgcagaccgtcaactgcgatcctggcattgccgttggttatgatgagttcaat
gcagtggactttagcggcacgttcttcatcaacacagaccgtgatgacgattatgccggc
tttgtgtttggctaccaatccagctcacgtttctatgtggtgatgtggaaacagatcaca
cagacctactggtctcatacgcccaccaaagcccagggttactctggactgtccattaaa
gtagtgaactccactacaggaccgggcgaacatctcaggaacgctttgtggcacactgga
gacaccgaaggacaagtgcgtaccctttggcacgaccccaagaacattggctggaaggat
tacactgcctacagatggcacctgatccacagacccaaaaccggacacatcagagttatc
atgtatgagggcaagaaagtcatggcagattcaggaagcatcattgacaagacatacgct
ggaggaagacttggcctctttgtcttctctcaagagatggtttacttctcagacctcaaa
tacgaatgccgagatgtataa
DBGET
integrated database retrieval system
