Megalobrama amblycephala (Wuchang bream): 125277812
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Entry
125277812 CDS
T08212
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1 isoform X1
KO
K16857
thrombospondin 1
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb04115
p53 signaling pathway
mamb04145
Phagosome
mamb04148
Efferocytosis
mamb04350
TGF-beta signaling pathway
mamb04510
Focal adhesion
mamb04512
ECM-receptor interaction
mamb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
125277812 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125277812 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
125277812 (thbs1b)
04148 Efferocytosis
125277812 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
125277812 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
125277812 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125277812 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mamb04131
]
125277812 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mamb00536
]
125277812 (thbs1b)
Membrane trafficking [BR:
mamb04131
]
Endocytosis
Phagocytosis
Opsonins
125277812 (thbs1b)
Glycosaminoglycan binding proteins [BR:
mamb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125277812 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
VWC2L_2nd
EGF_3
TSP1_ADAMTS
Laminin_G_3
cEGF
EGF
Zn_ribbon_NUD
TSP1_CCN
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
125277812
NCBI-ProteinID:
XP_048062283
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All DBs
Position
LG11:complement(16267858..16278123)
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AA seq
1172 aa
AA seq
DB search
MKSTAIFLLLMLWNCESARVAESRDDNSVYDLFELVQVPRKNHGVTLVKGDDPYSPAYKI
LNPDLIPPVPESAFRDLIDSIHAERGFLLLVNFKQFKHTRGSLLTVEKNDGSGPVFEIIS
NGKANTLDIVFSTENKQQVVSIEEADLAVGHWKNITLFVQEDRVQFYVGCEEVNTAELDA
SIQSILTQETPGVASLRIGKGAVKDRFMGVLQNVRFVFGTTLEAILRNKGCQNSAVMTDI
ITLDNPINGSRPAIRTDYTGHKTKDLQMICGFSCEDLAGMFKELKGLGVVVQELSKELRK
VMDEKNVLMNYMGIHTGVCLHNGIVHKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCA
NATVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSV
QTRDCYLQECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQMEGKDCQGEG
RQTERCEKSPCPINGGWGPWSPWDTCSITCGGGVQNRKRLCNNPIPKYGGKDCVGDAKAS
QLCNKQACPIDGCLSNPCFEGAQCTSFPDGSWKCGKCPTGYTGNGINCKDINECEEVPDA
CFEFNGVHRCENTVPGYNCLPCPTRYTGPQPFGRGVEDAAAKKQVCTPRNPCLDGSHDCN
KNARCNYLGHFSDPMFRCECKPGFAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNC
PNLPNSGQEDYDKDGIGDACDDDDDDDGIPDDRDNCPLIFNPRQYDYDRDDVGDRCDNCP
YNSNPDQTDTDNNGEGDACAVDIDGDGILNENDNCPYLYNVDQKDTDFDGVGDQCDNCPL
EHNPDQLDSDADRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDYDD
DNDGIPDDKDNCRLVPNPDQLDSDGDGRGDACKDDFDQDNVLDIYDVCPENFDISETDFR
KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTER
DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSSTPTKAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGDTPGQVRTLWHDPKNVGWKDFTAYRWHLTHRPRTGHIRVVMYEGKKIMADSGRI
YDKTYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcaactgcaatctttttgctactgatgctttggaactgcgagagcgcgagagtc
gcagaaagtcgagacgacaacagtgtttacgatttgtttgagctcgtccaagtgccgagg
aaaaaccacggggtcaccctggtgaaaggcgacgacccgtacagtcccgcctacaagatc
ttgaaccccgacctgatccccccggttcccgagagcgccttcagggacctaatcgattcc
attcacgccgagagaggatttctgctcctggtcaatttcaagcagttcaagcacacgagg
ggaagccttctgaccgtggagaagaatgacggctccggacccgttttcgaaatcatttcc
aacgggaaagccaacactctggacattgttttttccactgaaaacaagcaacaggtcgtg
tccatcgaggaagcggacttggcggtgggacactggaaaaacatcactcttttcgtgcag
gaggacagggttcagttctatgtgggatgtgaggaggtgaatacagcggagctcgatgct
tctatccagtcaatcctcactcaggagaccccgggggtggcgagcttgaggatcggcaag
ggcgcagtgaaggacaggttcatgggggtgctgcaaaacgtgcgctttgtgttcggaaca
actctggaagcgattctgaggaataaaggatgccaaaactcagcagttatgactgatatc
atcacccttgacaatcccataaatggatccagacctgcaatcaggactgattacaccggc
cacaaaacaaaagatctgcagatgatttgtggcttctcatgtgaggacctggctggcatg
ttcaaggaactgaaaggtcttggtgtggtggtgcaagaactgtccaaagaactccgcaaa
gtgatggatgagaaaaacgtgctcatgaattacatgggcattcatactggtgtctgtctt
cacaatggaattgtgcacaaaaacaaggacgaatggacggtggatgattgcacagagtgc
acttgccagaactctgcaacggtgtgccgcaagatttcatgtcccctaatcccgtgtgca
aatgccacagtgcctgatggggaatgctgccctcgttgtggaaccccgagcgactccgct
gaggatggctggtccccctggtctgaatggacccattgttctgtgtcctgtggaaggggc
attcagcagcgcggccgctcttgcgaccgcatcaataacaactgcgagggcacgtctgtg
caaacgagagactgctacctccaggagtgtgacaagcgctttaagcaagatggcagctgg
agtcactggtcaccctggtcctcctgctcggtcacctgtggtgctggcgttatcactcgc
atccgtctctgcaactccccaacacctcagatggaaggcaaagattgccagggtgaaggt
cggcaaactgagaggtgtgagaaatcaccatgtccgatcaatggcggctggggaccatgg
tcaccctgggacacttgctccattacctgtggcggtggcgtccaaaatcgtaagcgtctt
tgcaataacccaatacccaagtatggtggcaaagactgcgtaggagacgcaaaggccagc
cagctttgcaacaaacaagcctgtccaattgatggatgtctttcaaatccatgctttgaa
ggagcccagtgtacaagcttcccagatggctcttggaaatgtggaaaatgccccacagga
tacactggcaatggaatcaactgcaaggatatcaatgagtgtgaggaagtccctgatgcc
tgctttgaatttaacggagtccataggtgtgagaacacagtgccaggctacaactgcctg
ccatgccccactcgctacaccggcccacagccatttggtcgaggagtggaagatgctgct
gccaagaaacaggtgtgcacgcctcgtaatccctgcctcgatggaagccacgactgcaat
aagaacgctcgttgcaactacctgggccatttctcagaccctatgttccgatgcgagtgc
aaacctggctttgctggaaatggacacatctgtggagaggacactgatcttgatggctgg
cctaatgctgatcttgtgtgtgtcgagaacgcaacctatcactgcaaaaaggacaactgc
cccaatcttcccaactctgggcaagaggactatgacaaggatggaattggtgatgcttgt
gatgatgatgatgacgatgatggcattcctgatgacagggacaactgcccactcatcttc
aacccaagacagtacgactatgatcgcgacgacgtgggagaccgctgtgataactgtccg
tacaacagtaacccagaccagactgacacggacaacaatggtgaaggtgacgcctgtgct
gtggacattgatggagatggtattttgaatgagaatgacaactgcccgtatctgtacaac
gtcgaccagaaggacaccgatttcgatggagttggtgatcaatgtgacaactgccctctg
gaacacaacccagaccagctcgactctgatgcggaccgtgtcggagacaaatgtgacagc
aaccaggatatcgacgaggacggccaccaaaacaacctagacaactgcccgtacatccct
aacgcgaaccaggctgatcacgacaaggatggtaaaggagatgcctgtgactatgatgat
gataatgatggcatccctgatgacaaagacaactgcagattggttcctaatccagatcaa
ctggattctgatggcgatggacgtggtgatgcctgcaaagatgactttgaccaggacaat
gtcctagatatctatgatgtgtgtcctgagaactttgacattagtgaaaccgacttccgc
aaattccagatggtacctctggatcccaagggcacttctcagattgaccccaactgggtg
gttcgtcatcaaggaaaagaactggttcagacagtcaactgcgaccccggcattgctgtt
ggttttgatgaattcaattcagtcgacttcagtggaacgttcttcatcaacacagagagg
gatgatgactacgccggctttgttttcggataccaatccagctctcgcttctacgtggtc
atgtggaaacagatcacacagacctactggtccagcacacctaccaaggcacagggttac
tcagggctgtcaatcaaagtggttaattccaccacagggccaggtgaacatctgaggaac
gccctctggcacaccggagacactccaggacaggtgcgcacgctgtggcatgacccgaag
aacgtgggatggaaggacttcactgcttacagatggcacctgacgcatagaccaagaact
ggacatataagagtggtcatgtatgaaggcaaaaaaatcatggcagattctggcagaatt
tatgacaaaacatacgcaggcggaagactgggtctctttgtcttctcacaagagatggtg
tacttctcagacctcaaatacgaatgcagagatgcgtaa
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integrated database retrieval system
