Mycteria americana (wood stork): 142416669
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Entry
142416669 CDS
T11228
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
mame Mycteria americana (wood stork)
Pathway
mame03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
mame00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
142416669 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mame03000
]
142416669 (KDM2B)
04121 Ubiquitin system [BR:
mame04121
]
142416669 (KDM2B)
03036 Chromosome and associated proteins [BR:
mame03036
]
142416669 (KDM2B)
Enzymes [BR:
mame01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
142416669 (KDM2B)
Transcription factors [BR:
mame03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
142416669 (KDM2B)
Ubiquitin system [BR:
mame04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
142416669 (KDM2B)
Chromosome and associated proteins [BR:
mame03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
142416669 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
142416669 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
LRR_At5g56370
LRR_4
Motif
Other DBs
NCBI-GeneID:
142416669
NCBI-ProteinID:
XP_075372597
LinkDB
All DBs
Position
13:11108113..11238575
Genome browser
AA seq
1302 aa
AA seq
DB search
MKLSKKMEAEKDSGRRLRSIGRRRYDENEDLSDVEEIVSIRSFNLEEKLKSKMYHGDFVH
AMDGKDFTFEYVQREALRVPLIFRNKDGLGIKMPDPDFTVRDVKLLVGSRRIVDVMDVNT
QRGVEMSMSQFVRYYETPEAQREKLYNVISLEFSHTKLENIVKRPNVVDLVDWVDNMWPQ
HLKARQTDATNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIP
PTLQNLELYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVF
GGNILHSFNVPMQLRIYEIEDRTRVHAKFRYPFYYEMCWYVLERYVSCVTQRCHLSREYQ
KESMLIDAKRKRSTDSYSSDSWLDMDEESCDAHIREEKDDSLDKKSRSLVDGSSSPNSTH
SEGKEGAGRKQKATVMRYLKRTLSNESDDSVKSTTPTDYPKTPTGSPATEVSTKWTHLTE
FELKGLKALVEKLESLPENKKCVPEGIEDPQALLEDMKNILKEHADDDQNLAISGVPVVS
WPKKTTKNRAVGRPKGKLGTTSAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCK
DMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSIC
NEIIHPGCLKVKESDGVVNDELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLL
KEQKMNRDNKEVTDAAKRKGDCEETPRRKSEEHSKKTQVDSILRRKSDEVHLWRKRKFEK
PQEPTMRKRLKLGREEKLFRKKRRSWKAPDDRTAMIKPLRRLKQEPEDDLPEAPPRSKDS
DQSRSSSPTAGPSTEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANE
NHQPIKSEPESENEEPKRALNNSERLHRFSKGLNGTPRELRHQLIPSLRSTPRGITRPPP
SLSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRV
CKTWNRWCCDKRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRL
PGLRDLLLSGCSWIAVSALCSSSCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGCNGC
TLESMETLSSSSGKEQFCGSCHIRPDISSGQIDNRSKLRNIVELRLAGLDITDASLRLII
RHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSYFKRCGN
ICQIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgaaactctccaaaaaaatggaggcagagaaagactctggaagaagattgcgatctatt
ggcagaaggcgatacgatgagaacgaggacctctcggacgtggaggaaattgtcagcatc
aggagtttcaatttggaagagaaattaaagagtaaaatgtaccacggggatttcgtgcat
gccatggacgggaaagattttacttttgagtatgtgcaaagagaagctctcagagttccc
cttatcttcagaaataaggatggactgggaattaaaatgcctgacccggatttcaccgtc
agagatgtgaagctattagtgggaagccgacggatagtggacgtgatggatgtgaacaca
cagagaggtgttgaaatgagcatgtctcaatttgtgagatactatgaaacaccagaggcg
cagcgtgaaaaactctacaatgtcatcagcctggagttcagtcacacgaagctggagaac
attgtcaagcgccccaatgtggtggacttagttgactgggtggataatatgtggccgcag
catttgaaggcgagacagacggatgctaccaatgctatttcagagatgaaataccccaaa
gtgaaaaagtactgtttgatgagtgtgaaaggatgcttcactgattttcacattgatttt
ggtggcacttcagtgtggtatcacgttttccgtggggggaagatcttctggctcattccg
cctactctgcagaatctagaactttatgaagaatgggttctctcaggaaagcagagtgat
atctttctgggagacagggtggaacgatgccaaagaattgagctgaaacaaggctatacg
ttcttcattccttcagggtggatacatgcggtttatactccagtagattctctggtgttt
ggtggaaatatcctgcatagctttaatgttcccatgcagcttcgcatctatgaaattgaa
gacagaacaagggtgcatgccaaattccgttatcctttctactatgaaatgtgctggtat
gttctggagagatacgtgtcctgtgtgacccagcgctgccacctcagcagagagtaccag
aaagaatcaatgttaattgatgcaaaaagaaaacgcagcacagacagctattcatcagat
tcgtggttagacatggatgaagaatcttgtgatgcccatatccgggaggagaaggatgac
agcttggataagaaatccagatccttggtggatggctcctcctcacccaacagcacacac
tcagaagggaaggagggtgcaggaagaaaacaaaaagccacagtaatgagatacctaaaa
agaactttgtctaatgagtcagatgacagtgtaaaatcaacgacccccacggactatccc
aaaacaccaacggggtctccagctacagaagtttcaaccaaatggactcacctcacagaa
tttgaactgaagggtttaaaagccctggtggaaaagcttgaatctctcccagagaacaag
aagtgtgttccagaaggcattgaagatccacaggctctcctagaggacatgaagaacata
ctgaaggaacatgctgatgatgaccaaaatcttgccatttcgggtgtccctgtggtcagc
tggcccaagaagaccacaaagaacagggcagtcggacggcccaaagggaaactgggcact
acttctgcggtcaagctcgcagctaatcggacaaccgctggagcacgtcggaggaggacg
cgatgccgcaagtgcgaggcgtgtctgcggacagagtgtggcgagtgtcacttctgcaaa
gacatgaagaaatttgggggacctggcaggatgaaacagtcctgcattatgaggcagtgt
atcgcaccggtgttgcctcatactgctgtgtgtctggtgtgtggagaagctgggaaagag
gacactgtggaagaggaggagagcaagtttaatctcatgctaatggaatgttccatttgt
aatgaaataatacacccaggatgccttaaggtgaaggaatcggatggtgtggttaacgat
gagctgccgaactgctgggagtgtccaaagtgcaaccatgcagggaaaactggaaaagcg
tacaagcaaaagcgcggaccaggattcaaatacgcatcaaatctcccaggctcattgctg
aaggaacagaaaatgaacagagacaataaggaagtaacagatgctgcaaaacggaaaggg
gattgtgaagaaactcccaggcggaaatcagaggaacattccaaaaagactcaagttgac
tcaatactgaggagaaaatcagacgaagtgcatctgtggaggaaaaggaaatttgagaaa
ccccaggaacccactatgagaaagcggctaaaacttggaagagaagagaaactcttcagg
aagaagcggcgatcatggaaggctccagatgaccgaactgccatgatcaaacccctgcgg
cgcctcaagcaggagccagaggatgacctgccagaagcacctcccaggtccaaggatagt
gaccagtcacggtccagctcgcccactgcaggtcccagcacagagggtgccgagcccagg
gacaagaagaagttcaagatgaggaggaaaaggcggcttcccaataaggaactgagcaag
gagctcagcaaggagctcaaccaggagatccaaaaaaccgagaacagccttgccaatgag
aatcaccaacccatcaaatctgaacctgagagcgagaatgaggaacctaagcgtgctttg
aacaacagcgagagactccataggttcagcaaagggttaaatgggactccccgagagctg
aggcaccagctcatccccagcctgcgaagcacacctcggggaataacccggccaccgcct
tcgctctctcctcccaaatgcattcagatggaacggcacgttatccggccgcctcccatc
agcccccctccggactcgctccccctggatgacggggcagcccacgtgatgcagcgggaa
gtctggatggctgtctttagctacctcagtcatagggacttgtgcatctgtatgagagtt
tgcaagacctggaacagatggtgctgtgacaaaagattatggaccaaaatagatttaaac
cattgtaaatccatcactccacttatgctcagtggcattattaggagacagcctgtaacc
cttgatcttagctggacaaatatatctaaaaagcagctgagttggcttatcaacagactc
ccaggtcttcgagacctgctgttgtcagggtgctcgtggatagcagtgtcggcactttgt
agttccagttgtcctttactccgaacgctggacgtgcagtgggcagaaggcctgaaagac
gcacaaatgagagacctcttgtcgccacccacagataaccggccaggctgcaacgggtgt
actttagagagtatggaaacactttcttccagttcagggaaggagcagttctgtgggtca
tgccacattcgcccggatatcagctcaggtcagatcgacaaccggagtaaactacggaac
atagttgagctgcgtttggctggcctggatattacagatgcttctttgcggctgatcata
aggcacatgcctctgctctccaaactcaatcttagttactgtaatcacgtgacagatcag
tctattaacctgctgaccgcggtcggaaccaccacgcgggattcattaacagaaattaat
ttatcagactgcaataaggttactgaccagtgcctgtcttacttcaaacgttgtggaaac
atctgccagatcgacctgaggtactgcaagcaggtgacaaaagaaggctgcgagcagttt
atagcagaaatgtcagtaagtgttcagtttgggcaagtggaagaaaaacttctgcaaaaa
ctgagttag
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