Mycteria americana (wood stork): 142421343
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Entry
142421343 CDS
T11228
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
mame Mycteria americana (wood stork)
Pathway
mame03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mame00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
142421343 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mame03400
]
142421343 (LIG4)
Enzymes [BR:
mame01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
142421343 (LIG4)
DNA repair and recombination proteins [BR:
mame03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
142421343 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
SKA1
DUF2948
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
142421343
NCBI-ProteinID:
XP_075382116
LinkDB
All DBs
Position
1:158199705..158204062
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AA seq
912 aa
AA seq
DB search
MASAPASQPSPKKTVASHVPFADLCSTLERIQRCKSRPEKTKYFKEFLDSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLHYRTP
AGTRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGLLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSEQTIFSTFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMNNQIFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNRFDIKRMV
EDSDLQTCFCVFDVLMVNSQKLGHEVLSKRYEILSSVFTPVTGRIHVVHKKSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVSGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPTVFHSICRVGSGYTMKELYNLGLKLAKHWKPYHRKDPP
CNILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLGDLRSKAEGKLASKHLHIDECDEPQEKKRKTVSKVKKVIGIAEQFKAPDLSNVSKV
SNVFEDVEFCVMTGTRKYPKSELESKIAECGGSVVQNPGPETYCVIVGAENIRVKNIIAS
NKYDVVKAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTADTDVAQLK
EVFSRMKGNKVMSLDMIAALEERYSWNSCHLSIFRGNTIYVDCYAVVNEPKTKIHGTTLS
IRALELRFYGAKVVSLLEEGISHVVVGEDHSRVQEVKALRRTFGKKFKIVSELWVTESVE
EGVPKNENQYLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgcacctgcttcacagccttctcctaaaaaaacggtggcctctcacgtccct
tttgcagatctgtgctctactctggagcgaatacagagatgtaaatctcgacctgagaaa
acaaagtatttcaaggagttcctggattcctggagaaaattccatgatgctcttcatcaa
aaggagaaagatgtcacggattctttttatccagctatgcgacttattcttccacagttg
gaaagagaaaggatggcatatggaattaaagaaactatgctcgcgaagctatatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaagcttttacattacagaacacct
gctggcacacgtggagatgctggagattttgcaatgattgcatactttgtgttaaaacct
aggagtccaaaacaaggcagactgacgatagaacaagtcaatgaacacttagatgcgata
gctaacaataatgctgctaaaaacaagggtctgttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacagaaatggctcatccggatgattataaaggatctaaag
cttggtgttagtgaacaaactatattttccacttttcatcctgatgctgccgaattacac
aacgtcacaactgatttggaaaaagtttgcagacaactgcatgatccctctgtctcactt
agtgatgtttctatcatgttgttttctgcctttaagccaatgcttgctgctattgctgat
gtccagcaaattgagaaacaaatgaataaccagatattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggagatgtgtataaatatttttcccgaaatggg
tttgactatactcagcagttcggtgcttccccccttgatggctcattaacgccgtttatt
cataatgtatttaagagcaatatacaaaattgcattctcgatggtgaaatgatggcttac
aatcctgagacgcaaacctttatgcaaaaaggaaacagatttgacataaaaagaatggtg
gaggactctgatctgcagacatgcttctgtgtgtttgatgtattgatggttaacagtcag
aagctgggtcacgaagtactaagcaaaaggtatgaaatcttaagtagcgtatttaccccg
gtaacgggcaggatacatgttgtacataaaaaaagtgccagaacgagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaagggattatggtgaaagatcccatg
tccacctacaagcccgacaaacgtggggaaggctggttaaaaatcaagccagaatacgtc
agtgggctgatggatgaactagaccttttaattgttggtggttactggggaaagggctca
cgtggtggaatgatgtctcattttctgtgcgctgttgcagagacgccccctccaaatgaa
aaaccaacggttttccactctatttgtcgtgttggctctggctatactatgaaggaattg
tataatttaggtttgaagctggctaaacactggaagccctaccataggaaggaccctccc
tgtaacattttgtgtggaaccgagaaacctgaaatgtacattgaaccttgtaactctgtc
atagttcagatcaaggcagccgagatcgttaacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagagaggacaaagaatggtacgagtgcatgact
tcagacatgttaggagatctcagaagcaaagcagaagggaagctggcatctaagcatctt
catatagatgagtgtgatgagccacaagagaagaagaggaaaaccgtatcaaaggtgaag
aaggtaattggaatagctgagcaatttaaagctcctgatctttctaatgtaagcaaggtt
tcaaatgtatttgaagatgttgagttttgtgttatgacaggaacgcgaaaatacccaaag
tcagaactggaaagcaaaatagctgaatgtggtggcagcgtggtacagaacccagggccg
gagacttactgtgtcattgtaggagctgagaatatcagagtgaaaaacatcattgcttcc
aacaaatacgatgtggtgaaggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcagccagcctttatgattcacatgtctcctgacacaaaagaacattttgct
cgtgagtatgattgttacggagacagctacacagcagacacagatgttgcacaactcaag
gaagtgttctcaagaatgaaaggtaataaggtgatgtctttggacatgattgcagcgtta
gaagaacgttattcgtggaacagttgtcacctcagtatattcagaggaaatactatttat
gtggactgttacgctgttgttaatgagcccaaaaccaaaatccatggaacaacactgtca
attagagctttggagctccgtttttatggtgcaaaagtagtctctctccttgaagagggc
atctcccatgtggttgtaggagaagatcattcccgggtacaagaggtgaaagcgctcagg
agaacatttgggaaaaaatttaaaattgtgtctgagctgtgggtaacagagtcagtggag
gaaggagtcccaaagaatgaaaatcagtacttaatttaa
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