Marinobacter sp. MMG032: ABNF92_01720
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Entry
ABNF92_01720 CDS
T10637
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mamm Marinobacter sp. MMG032
Pathway
mamm03030
DNA replication
mamm03410
Base excision repair
mamm03420
Nucleotide excision repair
mamm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mamm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABNF92_01720 (ligA)
03410 Base excision repair
ABNF92_01720 (ligA)
03420 Nucleotide excision repair
ABNF92_01720 (ligA)
03430 Mismatch repair
ABNF92_01720 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mamm03032
]
ABNF92_01720 (ligA)
03400 DNA repair and recombination proteins [BR:
mamm03400
]
ABNF92_01720 (ligA)
Enzymes [BR:
mamm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABNF92_01720 (ligA)
DNA replication proteins [BR:
mamm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABNF92_01720 (ligA)
DNA repair and recombination proteins [BR:
mamm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABNF92_01720 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABNF92_01720 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABNF92_01720 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABNF92_01720 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
RNA_pol_A_CTD
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
XBQ19906
UniProt:
A0AAU7MNQ4
LinkDB
All DBs
Position
complement(370659..372695)
Genome browser
AA seq
678 aa
AA seq
DB search
MSKATPDITQRVEELRSVIDDHNYRYYVLDDPRIPDAEYDRLFRELQTLEADYPELASDT
SPTRRVGSAAETSFEEVVHRLPMLSLDNAFNEDELREFDRRVRDRLGISEDVEYVCEPKL
DGLAVSLHYENGALTTAATRGDGYSGEDITANIRTIPSVPLKLRGEDVPDLVEIRGEVYM
PKDGFEQLNRRLAERGEKTFVNPRNAAAGSLRQKKSTVTAKRPLEMCAYSVAVTDESLLP
DTQWDGLQRVQSWGFRINPEMRKAKGVEECLEAYSELMAKRDTLPYEIDGIVFKVNRLDQ
QNALGFVSRAPRWAIAHKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNA
TLHNMDEIRRLDVRIGDTVFIRRAGDVIPQVVKVVPEKRPSGAREVELPAHCPVCDSDVI
QIEGEAVARCSGGLFCPAQRKEAIRHYASRKALDIEGLGDKWIDIMVDQGMVKTVADLYH
LTTDDLVKLERMGEKSAANLVAAIDKARKPVLWRFLYALGIREVGEATAKGLASHFGTLE
AIAAADEESLQSVPDVGPIVAGHIRSFFEQTHNRETLDALRDAGVEWQEEQIQKGDKPLK
GQTWVLTGTLSGMTRDEAKEKLESLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLEVPV
LDEAGLVALLQEHGVDAG
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagccacgcccgatattacccagcgtgtagaagaactccgttcggttattgat
gatcacaactaccggtattacgtgctggacgacccccgtattcccgatgcggaatacgac
aggctgttccgtgagctgcagaccctggaagccgattatccggagctggcctcagatacc
tcgcccacccggcgagttggcagtgccgcggaaaccagttttgaggaggtggttcaccgg
ctgcctatgctgtcgctcgacaacgccttcaatgaggatgaactgcgggaattcgatcgg
agggtgagggaccggctgggcatcagcgaagatgtggaatacgtgtgcgaacccaaactc
gatgggctggcggtcagtctgcactacgagaatggcgccctcaccactgccgccacccgg
ggtgatggttactccggagaggacatcaccgccaatatccgaacgattccttcggtgcca
ttgaagctgcggggcgaagatgtgccggatcttgtagagatccgtggcgaagtttacatg
cccaaggacggtttcgagcaactgaatcgtcgactggccgagcgcggggagaaaaccttc
gtaaacccccggaacgcggcggctggcagtctcaggcagaaaaagtccacggtcacggcg
aagcgtccgctggaaatgtgcgcctacagtgttgccgtgacggacgagagcctgttgccc
gatacccagtgggatggcctccagcgcgttcagagttggggtttccggatcaatcccgag
atgcgcaaggcgaaaggcgtggaggagtgccttgaggcctacagcgagctaatggccaag
cgggacacgctgccatatgaaattgacggcatagtgttcaaggtgaaccgccttgaccag
caaaatgccctgggttttgtctccagggcgccgcgctgggcgattgcccacaagttcccg
gcgcaggaagagctcaccgttattgaggatgtggagttccaggtgggtcgaacgggagcc
gttaccccggtggcccgtctcaagcctgtgtttgtcggtggcgtgaccgtcagcaacgcc
actctccacaacatggacgaaatccgccggctcgatgttcgcatcggcgataccgtgttt
atccgtcgcgccggtgatgtgatacctcaggtggtcaaggtggttcccgaaaagcgtccc
tcgggcgccagggaagtggaattgcccgcccattgcccggtctgcgattccgacgttatc
cagattgaaggggaagcggtagcccgatgctctggcggcctgttctgtccggcccagcgc
aaagaagccatccgtcactatgcttcccggaaagccctggacattgaagggctgggtgac
aaatggatcgacatcatggttgatcagggcatggtaaaaaccgtggccgacctttatcac
ctgaccaccgatgatctggtcaaacttgagcggatgggggagaagtcggccgccaacctg
gtcgctgccatcgataaagccagaaaacccgttctatggcgttttctatacgcgcttggg
attcgcgaggtgggggaggccaccgccaagggcctggcttcgcacttcgggactctcgag
gccattgccgccgccgatgaagaaagcctgcagtcagttcccgatgtcgggccgattgtc
gctggtcatatccgcagcttcttcgaacagacccataaccgggaaaccctggatgccctg
cgggacgccggcgtggaatggcaggaagagcagatccagaaaggggacaagcccctgaag
ggccagacttgggtgctgacgggcacgctctcaggaatgactcgcgacgaagccaaagaa
aagctggagtctctgggagccaaggtggccggaagcgtctccaaaaagaccgcctgcgtg
gtagcgggcgaggccgcgggttccaagctggcgaaggccgaacagttggaggttcctgtc
ctggatgaggcgggcctggttgctctgctgcaggagcatggcgtggatgcgggctaa
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integrated database retrieval system
