Massilia antarctica: IV454_26875
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Entry
IV454_26875 CDS
T08186
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
manc
Massilia antarctica
Pathway
manc03030
DNA replication
manc03410
Base excision repair
manc03420
Nucleotide excision repair
manc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
manc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IV454_26875 (ligA)
03410 Base excision repair
IV454_26875 (ligA)
03420 Nucleotide excision repair
IV454_26875 (ligA)
03430 Mismatch repair
IV454_26875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
manc03032
]
IV454_26875 (ligA)
03400 DNA repair and recombination proteins [BR:
manc03400
]
IV454_26875 (ligA)
Enzymes [BR:
manc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IV454_26875 (ligA)
DNA replication proteins [BR:
manc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IV454_26875 (ligA)
DNA repair and recombination proteins [BR:
manc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IV454_26875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IV454_26875 (ligA)
MMR (mismatch excision repair)
DNA ligase
IV454_26875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IV454_26875 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
5_3_exonuc
DUF4796_N
Auto_anti-p27
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QPI53452
LinkDB
All DBs
Position
complement(6124032..6126065)
Genome browser
AA seq
677 aa
AA seq
DB search
MAQLTAELNRHIFSYHVQDAPTIPDAEYDRLFRELQALEAAHPEAVSVDSPTYRVGATPL
PEFKQVTHSIPMLSLNNGFEDEDIENFDRRAREGLDADAVEYAAELKFDGLAISLRYENG
VFVQAATRGDGATGEDVTANIRTVRAIPLRLHGDTVPAVLEVRGEVLMYKADFAKLNARQ
RDAGQKEFANPRNAAAGSLRQLDSRITAQRSLRFFSYGVGALEGAGMPPSHSALLDWYQT
LGLPVSSERAVVTGAQGLLDYYRDIGKRRPTLAYEIDGVVYKVNRLEHQQKLGFVSRAPR
FAIAHKFPAEEALTQVLDIEVQVGRTGAITPVARLAQVNVGGVNVTNATLHNEGEVRRKD
IRIGDTVIVRRAGDVIPEVVSFVAERRPLDVREFVMPANCPVCGSPIVRLEDEAVARCSG
GWTHCSAQKKGGLMHFVSRRALDVEGLGDQLIEQLVDKGLINNAADLYTLDKEKLAGLDR
MAAKSAQNVVDALEKSRDTTMARFIYALGIRNVGESTAKALAQHFGNLEALLHAASFEGG
LQLLEVPDVGPIVARSISEFLTDADNLALVRTLAAKLHWKEGEHVMKNTGAMAGKTFVIT
GTLPTLSRDEAGALVEAAGGKVSGSVSKKTSYVVAGADAGSKLAKAQELGITLLDEAALL
SLLATASSTEPNQDESS
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagctgacggccgaactgaatcgccacattttttcgtaccacgtgcaggatgcg
ccgaccattcccgacgccgagtacgaccgcctgttccgcgaactgcaagcgctcgaagcg
gcccacccggaagcggtgtcggtcgactcgcccacctaccgcgtgggcgccacgcccctg
ccggagttcaagcaggtcacgcacagcattccgatgctctcgctgaacaacggcttcgag
gatgaggatatcgagaacttcgaccgccgcgcgcgcgaagggctcgatgccgacgccgtg
gagtacgcggccgaactcaaattcgacggcctggcgatcagcctgcgttatgaaaacggc
gtgttcgtgcaggccgccacgcgcggcgacggcgccaccggcgaagacgtcacggcgaat
atccgtacggtgcgcgccattcccctgcgcctgcacggcgacacggtgccggcggtgctc
gaggtgcgcggcgaagtgctgatgtacaaggccgatttcgccaagctcaatgcgcgccag
cgcgacgccggccagaaggagttcgccaatccgcgcaacgccgccgccggcagcctgcgc
cagctcgactcgcgcatcacggcccagcgcagcctgcgcttcttttcctacggcgtgggc
gcactggaaggcgccggcatgccgccgtcgcactcggccctgctggactggtaccagacg
ctcgggctgccggtatcgagcgagcgcgctgtcgtcaccggcgcgcaaggcctgctcgac
tactaccgcgacatcggcaagcgccgcccgaccctggcctacgaaatcgacggcgtggtg
tataaggtcaaccgcctcgaacaccagcaaaagctcggttttgtgtcgcgcgcgccgcgc
tttgcgatcgcccacaaattcccggccgaagaagcgctcactcaggtgctcgacatcgaa
gtgcaggtcggccgcaccggcgccatcaccccggtggcgcggctggcgcaggtcaatgtc
ggtggcgtgaacgtcaccaacgccaccttgcacaacgaaggcgaagtgcggcgcaaggat
attcgcatcggcgacacggtcatcgtgcgccgcgccggcgacgtgattcccgaagtggtg
tcgttcgtggccgagcgccgtccgcttgatgtgcgcgaattcgtcatgccggccaactgc
ccggtgtgcggctcgcccattgtgcgcctggaagacgaagcggtggcgcgctgctccggc
ggctggacccattgcagcgcccagaagaagggcggcctgatgcactttgtgtcgcgccgc
gcgctcgatgtcgaaggcctgggcgaccagctgatcgaacaactggtcgacaagggcctg
atcaacaatgcggccgatctgtacaccctggacaaggaaaagctggcgggcctcgaccgc
atggccgccaagtcggcccagaacgtggtcgacgcgctcgaaaaatcgcgcgataccacc
atggcgcgcttcatctacgcgctcggcatccgcaacgtgggcgagtcgaccgccaaggcg
ctggcccagcacttcggcaacctggaagcgctgctgcatgcggccagcttcgaaggcggc
ctgcaactgctggaagtgcccgacgtcggcccgatcgtggcgcgctcgatcagcgaattt
ttgaccgatgccgacaacctggcgctggtgcgtaccctggcggccaagctgcactggaag
gaaggcgagcacgtgatgaaaaacacgggcgccatggccggcaagaccttcgtcatcacc
ggcaccctgccgaccctctcgcgcgatgaagccggcgcgctggtcgaagcggccggcggc
aaggtctccggatcggtatcgaaaaagacctcatacgtcgttgccggtgcggacgccggc
agcaaactggccaaggcgcaggagctcggcatcacgctcctcgacgaagcggcccttctt
tcactgctggcgacagcatcttccacggaaccgaatcaagatgaatccagttag
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