Mangrovimonas sp. YM274: RBH95_10720
Help
Entry
RBH95_10720 CDS
T09317
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mang
Mangrovimonas sp. YM274
Pathway
mang03030
DNA replication
mang03410
Base excision repair
mang03420
Nucleotide excision repair
mang03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mang00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RBH95_10720 (ligA)
03410 Base excision repair
RBH95_10720 (ligA)
03420 Nucleotide excision repair
RBH95_10720 (ligA)
03430 Mismatch repair
RBH95_10720 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mang03032
]
RBH95_10720 (ligA)
03400 DNA repair and recombination proteins [BR:
mang03400
]
RBH95_10720 (ligA)
Enzymes [BR:
mang01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RBH95_10720 (ligA)
DNA replication proteins [BR:
mang03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RBH95_10720 (ligA)
DNA repair and recombination proteins [BR:
mang03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RBH95_10720 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBH95_10720 (ligA)
MMR (mismatch excision repair)
DNA ligase
RBH95_10720 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RBH95_10720 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
PADR1_N
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
WMI67616
LinkDB
All DBs
Position
complement(2493917..2495911)
Genome browser
AA seq
664 aa
AA seq
DB search
MDIQQRIIALREELRKHNYNYYVLDTPIISDYDFDMKLKELQELEAKHPEYYDSSSPSLR
VGGEITKNFETVVHEHRMYSLDNSYSKEDLLDWEARIKKMVDGTITYTCELKYDGASISL
TYEDGKLIKAVTRGDGFQGDNVTTNIKTIKSVPLQLTGDYPPKFDIRGEIVLPFEGFDKM
NEERIEIGEEPYRNPRNTASGSLKLQDSAEVAKRPLECLLYNITSSNLKIDTQFECLERA
RAWGFKVPNTARMANSIDEVLEFIAYWDVNRFDLPYETDGVVIKVNDLYQQEELGYTAKA
PRWAMAYKFKAEQVSTRLNHITYQVGRTGAITPVANLDPVELAGTIVKRASLHNADQIEK
LDIREGDEVFVEKGGEIIPKIIAVDLSKRPIDSQPTKYITRCPECDTELVRQEGEAQHYC
PNYNGCNPQIIGRIQHFISRKAMDIEGMGGETVALLVNEGLINNYSDLYALTKEQILPLE
RMAEKSADNLLKGIEASKQIPFERVLYALGIRYVGETVAKKLAKHYKSIDNLRLASLEDL
VNVDEIGVKIAESVLAFFNDETNINIVERLREFGLQLEISAEKLAEQTDKLKNLTFVVSG
VFETVSRNELKKLIEDNGGKVSSSISSKTSYLVAGDKMGPSKRTKAEQLNLEIITEAEFL
QMIM
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggatattcaacaacgtattattgccttaagggaagaactcagaaaacataattacaac
tattatgtattggacactccaattataagtgattatgatttcgacatgaagttgaaggaa
cttcaggaattggaggcaaagcatccagagtattatgatagcagttcgccatctttgagg
gttggcggagagattaccaagaattttgagacggttgtccatgagcacagaatgtactct
ttggataattcctattccaaagaagatttattggattgggaagctcgaatcaaaaaaatg
gtagatggtacaataacctatacttgcgagctcaaatacgatggcgcttccataagcttg
acttatgaggatggtaaattaattaaagctgttaccagaggagatggttttcagggtgat
aatgttacaaccaatataaaaacgattaagtctgttcctttgcaattaacaggagattat
cctcccaaatttgatattagaggagaaatagttttgccatttgaagggtttgataaaatg
aacgaagaacgtattgagataggggaagagccttatagaaatccaaggaatacggcttca
ggaagtttgaaattgcaagatagtgctgaggttgccaagcggccactggagtgtcttttg
tataatattacctcctccaatttaaaaatagatacacagtttgagtgtttagaaagggca
cgggcgtggggctttaaagtgccaaatacggcccgaatggctaattccatagatgaggtt
ttggagtttatagcttattgggacgttaatcgttttgatttgccgtacgaaacagatggg
gtggtaataaaagtgaatgatttgtaccagcaagaggaattgggatataccgccaaagct
cctcgatgggcaatggcttataagttcaaggctgaacaggtttcaaccagattaaaccat
attacttaccaagtaggacgtacaggagcgataactccggtggccaacctagatccggta
gaattggcaggtacaatagtgaaaagagcttctttgcacaatgccgatcaaatcgaaaaa
ttggatatcagagaaggagatgaagtgttcgtagaaaaaggaggggagatcataccaaag
attattgcggtggatttaagcaaacgcccaatagactcacagcctacaaaatatattacc
cgctgtccagaatgtgatactgaattggtaaggcaggaaggagaagcccagcattattgc
cccaattacaatgggtgtaatcctcaaattattggtcgtattcagcattttatttcccga
aaggctatggacattgaaggtatgggaggcgaaactgttgctttgttggtcaatgagggc
ttgattaataattattcagatttgtatgcgcttaccaaggagcaaattctccctttggaa
agaatggctgaaaagagtgctgataatttactgaaaggtattgaggcttctaaacagatt
ccttttgaaagagtattgtacgctttggggattcgttatgttggtgaaacggtagctaaa
aaattggccaagcattataaatctatcgataatttgagattggcatcattggaagatttg
gttaatgtggatgaaataggtgtgaaaattgccgaaagtgttttggcattttttaatgat
gaaaccaatataaacatcgttgaacggttaagggaatttggtttgcaattggaaatttct
gctgaaaaattagccgaacagacagataaattgaaaaatctgacttttgtggtatctggg
gtctttgaaacggtttccaggaatgagcttaaaaagttaatagaagataacggcggaaag
gtctcatcttcaatatcttccaaaaccagctatcttgttgcaggggataaaatgggccct
agtaagcgaacaaaagctgaacaattgaatttagaaattattacggaagccgaatttctg
caaatgattatgtga
DBGET
integrated database retrieval system
