Misgurnus anguillicaudatus (oriental weatherfish): 129416835
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Entry
129416835 CDS
T09481
Symbol
pcdh15a
Name
(RefSeq) protocadherin-15a isoform X1
KO
K16500
protocadherin-15
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
manu03037
]
129416835 (pcdh15a)
04515 Cell adhesion molecules [BR:
manu04515
]
129416835 (pcdh15a)
Cilium and associated proteins [BR:
manu03037
]
Primary cilia and associated proteins
USH complex and associated proteins
129416835 (pcdh15a)
Cell adhesion molecules [BR:
manu04515
]
Cadherins
Protocadherins
129416835 (pcdh15a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Cadherin_2
SpuA_C
Motif
Other DBs
NCBI-GeneID:
129416835
NCBI-ProteinID:
XP_073729688
LinkDB
All DBs
Position
11:34621570..34973035
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AA seq
1401 aa
AA seq
DB search
MKRRWWRSGCLGSVIGLFVFFSQVSAQNTEECKLSRSGPPATIVTIDEESPNGTVLVENM
QINGRAQDPDRTISLTLLNNYDYWVILDSALQRLYLNSTGRVLDRDPPSYITTIVVQVQC
TNELVGTVILHEVRIVVRDKNDNTPKFQQPGYYVAVNELTPVGTTIFTGFSGSNGATDID
DGPNGQVEYGIQYNPNDPMSNRTVRIAGTLSGNIVLAERLNYEERTRYLIIVQANDRAPF
PGSRRTATTTLTLDVLDGDDLGPVFLPCVLVNNTQDCNPVTYRVAIPELTDPSKLNPLNV
TPPIRAIDQDRNIQPPSDRPGILYFILVGQPSVYPEFFSLNKSTAELRLLKPVDRELYQR
FNLVIKAEQDNGHPLPSYANLNIEILDENNQAPYFQRPSYQGFISESSSVGTTISVSANL
TAPLGIIALDNDIEETKDPQLLISMTDYTSIFTISSTGITRYLTLLKPVDREKQTNYTFT
LLASDGVQLSRPVTVDILVIDANDNSPTFTQVSYSVEVFTNMLPGETVLQLFAQDADAGL
NGLITYSILAGDQGDFIINNRTGRITLAPGVTLVVGRSYALTVRASDNAPDPERRSSITT
VYIEVLPPNNQSPPRFPLQTYNLEISEAMRIGAILMNLQATDRELDPITYQIDSGDPQQV
FNLSRTIGLLLLAKPLDRETTDQYRLIVTASDGHPGGISTATVSIVVTDVNDNDPTFDLT
LPRNLTVQEEQANVFVGQVRATDPDAGQNGQVRYRLLSYASLFTINSTGTIVTAVPLDRE
TRSRYDLIVEASDGAVDPRRATITLLVEVMDINDNSPVFSQATYTVNVPENTPAGTVILR
LSAVDADLVYKVTYRIKTEAARQLFAVNRLTGAVSVLQALDFEDLTAGNSTYTFEVEALD
HGGVLPPGTATVIVRITDMNDFTPVFSQQLYKGMVAPNAEKGTVITTVFAEDQDPPGSPA
SKVHYRVDQDLSPYSGSIFDVQQDTGRVVTKVNLNEQPTAVFRLVVIAYDDGEPVKMNRT
TVEITVLQPSRIPIFTEEEYRFSPVSESAPVGTPVGLILAAAVNTTVFYSIVDGNQGGEF
TVNNRTGIIYTNKSLDYETVTSYVLRVQADSLALILANLRVPSKTNTAKVYIEVQDENDH
PPVFSRSLYIGGVTEDTKTFTTVLKIVATDVDTGNYSKMAYRLIIPPAAEGQDSFIIETY
TGIIKSAIMFRNMRRSYFKFEVIATDNYGLGLSSRADVVVSVVNALDMQVVVSNVPPTVV
EENKDQLIAILERYVQDQIPGAKVIVESIGPRRHGEGYELEDYTKSDLQVYAIDPLTNRA
ISRQELFKFLDGKILDINKEFQPYLGEGGRILEIRSPDIVATVKKAAQAVGYTEGALLAL
AIIIILCCIPAILIVMVTYKQ
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcgctggtggcgatctggctgtctgggctctgtgattggcctctttgttttc
ttctcccaagtctcggcccaaaacactgaagaatgcaagttgtctcggtcgggtccgcct
gctactatcgtcaccattgatgaggagagtccaaatggcaccgttctcgtggaaaacatg
cagatcaatggtcgagcacaggatccagatcgaaccatctccttgacactgctgaataac
tatgattactgggttatccttgactcggcattgcagagactgtatctcaacagcaccgga
cgagtactcgaccgagacccaccaagttacatcaccaccattgtcgttcaggttcaatgc
accaatgaacttgtggggacagttattctgcatgaggtacggatagtggtgagggacaaa
aatgacaacacgcccaaattccagcagcccggttactacgtagcggtaaatgagctcact
ccagtcggtaccaccatcttcaccggcttctcaggaagcaacggagccacagacattgac
gacggaccgaatggacaggttgaatatggcattcagtacaacccaaatgacccgatgtcg
aacaggaccgtgcggattgctgggactctgtctggtaacattgtgttggcagagagacta
aattatgaggagagaactcgatatctaattatagtccaggccaatgaccgggctccgttt
ccaggaagtcgtcgcacagcaaccaccacactaaccctggatgttttagatggagatgat
ttgggtcccgtatttctcccgtgcgttctggttaacaacactcaggactgtaaccccgtc
acataccgcgtggccattcctgagctcacagacccgagcaagctgaaccctttaaatgtg
actcctcctattcgtgccatagaccaggatagaaacatccagcctccctcggacagaccc
ggaattctgtacttcatcctggttggtcaaccaagcgtttacccagaattcttttccctc
aacaagagcacagccgagctacgtctgctgaaaccagtggacagagagctttatcaacgc
ttcaatctcgtcattaaggctgaacaggacaacggtcaccctctcccttcatacgccaac
ttaaacatcgaaatcctggatgagaacaaccaggcaccatatttccagcgaccctcttac
cagggcttcatcagcgagtcatcctccgttggcacaaccatctctgtgagcgctaacctc
acagccccgctgggcatcatagcactggacaatgacattgaggagaccaaggatccccaa
ctgctgatttcaatgactgattacacctccatcttcaccatctcatctacgggcatcaca
cggtatctcaccctactgaaaccagtggacagagagaaacagaccaactacaccttcacg
ctgttggcatctgacggcgttcagctgagcagacccgtgacggtggacatcctggtgatc
gatgcgaacgataactcacccacctttactcaggtgtcctacagtgtggaggtcttcacg
aatatgttgcccggagagaccgtcttgcagctgtttgctcaggacgctgacgccggttta
aacggactgatcacgtactcgatcctggctggagatcagggtgatttcatcatcaataac
cgcacaggtagaatcacattagctccgggggtcacgctggtcgtcggccgctcgtacgct
ttgaccgtcagagcttcagacaatgcacctgacccagagagaaggagctccataactaca
gtctacattgaggttttgccacccaacaatcagagtcctccacgattccccctgcagaca
tacaacctagagatcagcgaagccatgaggatcggagccatactgatgaacctgcaggct
acagaccgtgagttggatccaatcacctaccagatagacagcggtgacccgcagcaggtc
tttaatctctcacgaactataggtcttctgctgctggccaaacctctggacagagaaacc
actgaccagtatcgtcttatcgtcaccgcttctgatgggcatccaggagggatatccacc
gccaccgtgagcattgttgtgacggacgtaaatgacaacgacccaacctttgaccttact
ctacccagaaacctgacagtgcaggaggaacaagctaatgtgtttgtgggtcaagtcagg
gccaccgatcctgacgcgggacagaacgggcaggttcgctaccggctgctctcctacgcc
tctcttttcaccataaactccacaggcaccatcgtcacggcggtaccgttggacagggag
acgcggagccggtacgacctgattgtggaggcatccgatggtgcggtagacccgcgtagg
gccaccatcacacttctagtggaggtgatggacatcaacgacaacagccctgtgttttca
caggccacgtacacagtcaacgtccccgaaaacacgcctgctggaaccgtcatactgaga
ctcagtgcggtggatgcagatctcgtctataaggtgacctacagaatcaaaacagaagcg
gcccggcagctctttgctgtgaaccggctgaccggcgccgtctctgtgcttcaggctctg
gactttgaggacctaacagcagggaacagcacgtacacctttgaagtggaggcgctggat
cacggcggagtcttgccacccggcacggcaacagtcatcgttaggatcacggatatgaat
gatttcacgcccgtcttcagtcagcagctttacaaagggatggttgctccaaacgcagag
aaggggactgttatcactactgtgtttgcagaagatcaggaccctccaggttcacccgcc
agtaaagtgcactacagagtggatcaagatctgtctccctacagcggcagtatctttgat
gttcagcaggacacaggcagagtcgtcaccaaagtcaatctgaatgagcagcccacagcc
gtcttcagactggtggtgatcgcctatgatgatggagaaccggtgaagatgaacagaact
acggtggaaattacggttctccagccctccaggatccccatcttcaccgaagaggaatac
aggttcagcccggtgagcgagagcgcacctgtcggaacgccggtgggacttattttggcg
gcagctgtcaacaccacagtcttttactctatagtggatggaaatcagggaggagagttc
acggttaataaccgcaccgggatcatctacacaaataaatcactggactatgaaacggtg
accagttacgtgctgcgggtgcaggccgactccctcgccctcatcctggctaacctacgc
gttccctccaaaacaaacacagcgaaggtttacatcgaggttcaggatgagaatgatcat
ccgccggtcttctcaaggtccctgtacatcggtggagtgacagaagacacaaagactttc
accacagtccttaaaattgtggctacagatgttgacaccggaaactacagtaaaatggct
tatagactgatcatcccacctgcggctgagggccaggacagtttcattattgagacctac
acgggcatcatcaagagcgccatcatgtttagaaacatgcgccgatcttacttcaagttt
gaggtcatcgccacagacaactacgggcttggtctgagcagcagagcggatgtggtggtg
tcggtcgtgaacgcgttggacatgcaggttgtggtctcaaacgtgccgcccaccgttgtg
gaggagaataaagatcagctgattgctattttggaacgctatgtgcaagatcagatcccc
ggtgctaaagtgatagtggagtcgatcggcccccgtcgacatggagagggatatgaactg
gaggactacactaaatcagatctgcaggtgtacgccatcgaccctctaaccaacagagcc
atctccagacaagagctcttcaagtttctagatggcaagattctggacatcaataaagag
tttcagccgtacctgggcgagggcgggcggattttggagatccgttctcctgacattgtt
gcgactgtgaagaaagctgcgcaggcggtgggctacacagagggggcgctgttggcgctg
gctatcatcatcatcctgtgctgcatccctgccattttaatagtcatggtgacgtataaa
cagtga
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