Misgurnus anguillicaudatus (oriental weatherfish): 129421524
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Entry
129421524 CDS
T09481
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
manu04040
]
129421524 (scn4aa)
Ion channels [BR:
manu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
129421524 (scn4aa)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
ATP-synt_B
IQ
GPHH
Motif
Other DBs
NCBI-GeneID:
129421524
NCBI-ProteinID:
XP_055033108
LinkDB
All DBs
Position
17:complement(13225705..13263807)
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AA seq
1813 aa
AA seq
DB search
MASLLPRTGVNAFRRFTPESLAEIERLIQEKSGREEVDGDEEEQPVPSSDLEAGKNLPMI
YGDPPDEFLNTPLEDIDPFYKAQKTFIVISKGNTIFRFSAEPALYFISPFNPVRRGAIKI
LIHSVFSMFIMITILSNCVFMTMSNPPAWSKTVEYVFTGIYTFEASIKVVSRGFCIGPFT
FLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGALIQSV
KKMVNVMILTVFALAVFALIGLQLFMGNLRQKCIRWPIDNSTIFNDDYNFTMTNVTSFNQ
TFDFNAYINNEDNQYFLDGSLDALLCGNSSDAGKCPEGYTCMKAGRNPNYGYTSYDNFGW
AFLALFRLMTQDYWENLFQLTLRAAGKGYMIFFVVVIFLGSFYLINLILAVVAMAYDEQN
EATITEAREKEEEFQRLLEQLRNQEQEAGSKASLASQTTQSRGSNRTGSLQSLRDCNGKI
IPQVNSVHPDKEISAEDEHRSVSIQDEDQWKLSKRAASAVSVLTGTMEDIEDAQRPCPPG
WYKFADIFLKWDCCPPWLIFKKWVHFIVMDPFADLGITICIVLNTLFMAMEHYPMSEDFE
HVLSVGNLIFTGIFTAEMVLKLIALDPYYYFQVGWNIFDSIIVTLSLVELGLANVQGLSV
LRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYK
DCVCKISEDCVLPRWHMTDFFHSFLIVFRILCGEWIETMWDCMEVAGTGMCLVVFMMVMV
IGNLVVLNLFLALLLSSFSGDNLSATEEDGEMNNLQIAIARITRALDWLKAFIARKVLQI
FGKKPPDVKEEEAEKDTELYSINHLQKETTTDAQTNCLTSSVPIAHCESDVEEEEDEEES
SDEDDIKVGLDDDLSVCSTADYQPPEPEPEPEEEEELEPEEPQPCFTEGCIRQCPCLNVD
TTEGWGKRWWNLRRTCFTIVEHDYFETFIIFMILLSSGALAFEDINIERRRVIKIVLEFA
DKVFTYIFILEMLLKWVAYGFKTYFTNAWCWLDFLIVDVSIVSLVANLLGYSELGAIKSL
RTLRALRPLRALSRFEGMRVVVNALIGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKFYY
CINTTSEERFPMDVVNNKSDCMNLVYTNEARWVNVKVNYDNVGMGYLSLLQIATFKGWMD
IMYAAVDSREVEDQPSYEINLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKAKFGGK
DIFMTEEQKKYYNAMKKLGNKKPAKPIPRPANKIQGLVFDLISQQFFDIFIMVLICLNMV
TMMVETDDQSAEKEEILYLINLIFVVVFTGECTLKLLALRQYFFTNGWNVFDFVVVILSI
AGLMLSDIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLL
LFLIMFIFSIFGMSNFAYVKKQAGIDDLFNFETFGSSIICLFEITTSAGWDGLLLPILNN
GPPDCDPNAENPGTEVKGNCGSPAIGIVFFSSYIIMSFLVVVNMYIAIILENFNVAQEES
GDLLCEDDFEMFNETWERYDLEATQFIDYDHLFDFADALLEPLRVAKPNRLKLIAMDLPV
VTGDKIHCLDILSAVTREVLGDTIEMVAMQSSIETKFKTNNPTSASFAPIVTTVRRKEEE
RAAIIIQQTYRRHLLRRAVRHACFMHRSKSEIRSREDEEAPETEGLIARKMGALYGSNPE
LAMALELRVRPMPADAERLPKTTSVVQHGASATYPRPQGQLVVPVELTSEAVLRSVPTSV
RASEKLYIKESVV
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atggccagcctgctccctcgcacaggagtcaacgcgttccgtcgcttcacaccggagtcg
ctggcagagatcgaaaggctcatccaggagaagagcggcagggaggaagtagatggagat
gaggaggaacaaccagtgcccagcagtgacctggaggcagggaagaacctccccatgatc
tatggtgacccaccagacgagttcctcaacacccctttggaggacatagaccctttctac
aaagcccagaaaacgtttattgtcataagcaaaggaaacacaatcttcaggttttctgct
gaaccagcactttactttatcagtccatttaatcccgtcagaagaggagccatcaaaatc
ctcatacattcagttttcagcatgttcattatgatcaccatcctgtccaactgtgtcttc
atgaccatgagtaatcctccagcctggagtaaaactgtggaatatgtctttactggtatc
tacacttttgaagcatccatcaaagttgtgtcgcgaggtttctgcattggaccttttaca
ttcctccgtgacccgtggaactggctcgatttcatggtcatcagcatggcgtacgtcaca
gagtttgtagatcttggtaatgtttcagcactgagaacctttcgtgtacttcgagctctc
aaaaccatcactgttattcctggtttaaaaaccattgtgggggctctgatccagtctgtg
aagaagatggtgaacgtgatgattctcaccgtttttgcgttggccgttttcgcactcatc
ggtctgcagttgttcatgggcaatctacgacaaaagtgcattcgctggccgatcgacaac
agcaccatctttaatgatgactacaactttaccatgaccaatgtcaccagcttcaaccag
acttttgattttaacgcttacataaacaatgaagataaccaatactttctagatggaagt
ttagatgctttattgtgtggtaacagctctgacgctgggaagtgtccagaaggatacacg
tgtatgaaggccggcaggaacccaaactacggctacaccagctacgacaacttcggctgg
gcatttctggctctctttagactcatgacccaggactattgggagaatctcttccagcta
actcttcgtgctgctggaaagggctacatgatcttcttcgttgtggtcatcttcttgggc
tctttctacctcatcaatctgatcttggctgttgtcgccatggcttacgatgagcagaac
gaagccacaattactgaagctcgtgagaaagaagaggagtttcagagattgctggagcag
ctcaggaaccaagagcaagaggcaggcagtaaagcatctttggccagccagacgacacaa
agtcgaggttcaaacaggacaggttcactacagagtcttcgagactgtaatggcaaaata
attcctcaagtcaacagtgtccatcctgacaaagagatatcggctgaagatgagcacagg
tctgtgagtatacaggatgaagatcagtggaaactctctaaaagagcagccagtgctgtc
agtgtactcacggggaccatggaagatatagaagatgctcagaggccttgtcctcctggc
tggtataagtttgctgacattttccttaaatgggactgctgccctccatggctcattttt
aagaagtgggtccattttatagtgatggacccatttgccgatctaggtatcaccatctgc
attgtgctcaacacgcttttcatggccatggagcactacccaatgagtgaggatttcgaa
cacgttctctcagtgggcaacttgatatttacaggaatcttcacggcagaaatggtcctc
aagcttattgcactggacccttattattacttccaggtgggctggaacatttttgacagc
atcatcgtcacgctcagtctggtggagttaggactggccaatgttcagggtctttctgtt
ctccgctcttttcgtttgctgcgtgtcttcaagctggctaaatcttggcccacccttaac
atgctgatcaagatcatcggtaactcggtgggtgctctggggaacttgactctcgtcctg
gccatcatcgtcttcattttcgccgtggtgggcatgcagctgtttggcaagagctacaag
gactgcgtgtgtaagatctctgaggactgcgtactgcctcgctggcacatgaccgacttc
ttccactcgttcctcatcgtcttccgaatcctgtgtggagagtggattgagaccatgtgg
gactgcatggaggtagctggaaccgggatgtgtttggtggtcttcatgatggtcatggtc
attggtaacctggtggtgttaaatctcttcttggccctgctgttgagctcattcagcgga
gataacctgtctgctactgaagaagacggtgaaatgaacaatcttcagatcgccatcgct
cgcatcaccagggctttagattggctcaaagccttcattgccagaaaggtgctgcagatt
tttgggaagaaacctcctgatgtgaaagaagaggaagcggaaaaagacacagaactgtac
tcaataaatcacctgcagaaagaaacaacgacagatgcccagacaaactgtttaacatct
tctgtacctattgcccactgtgagtctgatgttgaagaggaagaggacgaggaggaatct
tctgatgaagatgacataaaggtgggtcttgatgatgacttgtcagtgtgcagtacggcg
gactatcagcctccagaacctgagcctgaacctgaggaagaagaggaactggaaccggag
gagccgcagccctgtttcacagaaggttgcattagacaatgtccgtgtttgaacgtggac
accacagaaggatgggggaaaaggtggtggaacctccggagaacttgcttcaccattgtt
gagcatgactactttgagaccttcatcatcttcatgatcctcctgagcagtggagctctg
gcttttgaagacatcaacattgaacgccgtcgagtcatcaagatcgtcctggagttcgct
gataaagtcttcacatacatcttcatcttggagatgttactgaagtgggtggcatatggt
ttcaagacctactttaccaatgcatggtgctggctagacttccttattgttgatgtgtcg
atcgtgagcttagtcgccaatttattgggttattctgagctgggagcgatcaaatctctc
cgaacgctcagagctcttcgtccgcttcgagccctgtcaagatttgagggaatgagggtt
gtggtgaatgcactcattggtgccatcccatctatttttaatgtgctgctggtgtgtctg
atattttggctgatcttcagcatcatgggagtcaatctgtttgctgggaagttttattac
tgcattaacaccaccagcgaagaacgctttcctatggatgttgtgaacaacaagagcgac
tgcatgaatctggtgtacaccaatgaggcgcgctgggtcaacgttaaagtcaactatgac
aacgtgggaatgggttacctctctctactgcaaatcgccacatttaaaggttggatggac
atcatgtatgcagcagtggattcaagagaggtggaggatcagccatcctatgagatcaac
ctctacatgtacctgtattttgttatcttcatcatttttggctcattcttcaccctcaac
ctcttcattggtgtcattattgataacttcaatcaacagaaggccaagtttggaggtaag
gacatcttcatgacagaggaacagaagaagtactacaatgccatgaagaagctgggaaac
aagaaacctgctaagcccatccctcgtccagcaaataagatccagggtctcgtgtttgat
ttaatatcacaacagttctttgatatcttcatcatggtcctcatctgcctcaatatggtg
accatgatggtggagacggatgaccagagtgctgagaaagaggagattttgtacctgatc
aacctgatcttcgtggtggtcttcacaggagaatgtacgctcaagctgttggcgctcaga
cagtattttttcaccaacggctggaacgtctttgattttgttgttgtgattctgtctata
gcaggtctaatgttatcagacatcatcgagaagtactttgtgtctcccaccctgtttcgc
gtcatccgactggctcgaatcggtcgtgtgcttcgtctgataagaggggcgaaaggcatc
aggactcttttgtttgccttgatgatgtcacttcctgctctctttaacatcggactgctt
ctgttcctcattatgttcatcttctccatctttggaatgtctaactttgcctacgtgaaa
aagcaggcgggcatcgacgacctctttaacttcgaaacgttcggcagcagcatcatctgc
ctgttcgagatcacgacctcggcgggctgggacggccttctgctgcccattctgaacaac
ggccctccggactgcgaccccaacgccgagaaccccgggactgaggtcaagggtaactgc
ggcagtcccgccattggcattgtgttcttcagcagttacatcatcatgtccttcctagtg
gtggtgaacatgtacattgccatcattctggagaactttaacgtcgcccaggaggagagc
ggtgacctgctgtgcgaggacgactttgagatgtttaacgagacgtgggaaaggtacgac
ttggaagcgacgcagttcatcgattacgaccacttgttcgactttgccgacgccttgctt
gaaccgctacgggtggccaaacccaaccgcctgaagctgatcgccatggatttgcccgtg
gtgacgggtgacaaaatccactgtctggatattctttcggcagtgacccgagaggttctg
ggcgataccatagagatggtcgccatgcagagcagcatcgagactaagttcaaaaccaac
aaccccacctccgcctcttttgcacccatcgtcaccacggtcagaaggaaagaggaggag
cgtgccgctatcataattcagcagacgtaccgcagacatctgctcagacgcgccgtccgt
cacgcctgcttcatgcaccggtcaaagagcgaaatcaggagtcgggaagatgaagaagcg
cccgaaaccgagggcttgatcgcccggaaaatgggcgccctgtacggcagcaaccccgaa
ctagccatggctctcgagctgcgcgttagaccgatgccagctgatgctgagcggctgccc
aaaacgacctcggttgtacaacacggggcttcagcgacttaccctcgacctcagggacaa
ctcgtagtgccggttgagctcacgagtgaggctgtccttcgctccgtgcccacatctgta
cgtgcttcagaaaagctttacattaaagagtcagttgtgtaa
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integrated database retrieval system
