Misgurnus anguillicaudatus (oriental weatherfish): 129423961
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Entry
129423961 CDS
T09481
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
129423961 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
manu03400
]
129423961 (lig4)
Enzymes [BR:
manu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129423961 (lig4)
DNA repair and recombination proteins [BR:
manu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
129423961 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
DUF2023
Motif
Other DBs
NCBI-GeneID:
129423961
NCBI-ProteinID:
XP_055036477
LinkDB
All DBs
Position
9:complement(12427594..12431597)
Genome browser
AA seq
909 aa
AA seq
DB search
MMESSSKSDATTPTSVAAQVPFINLCTVLEKIQKAKLRPDKATILKDFIDSWRNFHAALH
KNNTSTTDSFYPALRLIVPQFERERMAYGIKENMLAKLYIDVLGLPKNGSEANKLLHYRA
PTTSQGESGDFALMAYFVLKSRCTSKGNLSIKEINDFLDSVAINNASKQKDQVKKSLLQV
ITQSSALEQKWLIRMILKDMKLGISKETILKVFHPDAPEFYNVTTNLDKVCRELHDTSVS
LSEVSINMFSAFKPMLAAVANVGQIEKQMGNRPFYIETKLDGERIQLHKAGDVYKYFTRN
SYEYTQQFGASPLEGSLTPYIHNVFKPHVVNCILDGEMMAYNPTAETFMQKGSKFDIKRL
MDDSDLQTCFCVFDVLLLNDQKLGNEPLKKRYEILHTIFTPIKGRIQLVSKSEGRTTQEV
VNALNEAIDSREEGIMIKDPMSIYKPDKRGKEWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRSGMLSHFLCAVAEEPSPGEKPTVFHTICRIGSGYTLKELYDLGLKLAKYWKIYNKNSP
PASILCGTEKPEVYIEPRNSVIIQVKAAEIVSSDMYKTNCTLRFPRIERIREDKEWHQCM
TLPELSQYRSKASGKLASRHLNYQEDQPEKKKRKIVVKPKKTIGVIDHFKSQDLSAVTKE
TDMFEGVEFCVINGNDERSKAELEKDVARCGGIVVQNPGKDTYCVIAAVQNMRVKNLISS
NQHDVVWATWLVECLEKKQVVPWQPRHMIHMSPPTREHFAKEYDKYGDSYYVDTNEQQVR
DVFGRIGPVDESPSVAQIEEKFAWDDLLTSIFRPYCAYFDRCADLGDAQTLIRGTRLDTR
ALEFRFHGGTVVEELKEGISHVIVDGEGRILDLKTLRRLYTKKFKIVRESWVTDSIEAGH
VVNDIDYLV
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaagttcatcaaaaagtgatgccacaacaccaacatcagttgctgcgcaggtt
cccttcatcaacctctgcaccgttctggagaaaatccagaaggccaaactccgaccggat
aaagccacaatcctgaaggacttcattgattcctggaggaatttccatgcagcacttcac
aagaacaacacgagcaccactgactcattttacccggccttacgtctcatcgtgcctcag
tttgagcgagagcgaatggcatacggtataaaagagaacatgctggccaaactttatatt
gacgttttgggtctacctaaaaatgggtctgaagcaaacaaacttctacattacagagcc
ccgactacatcccaaggggaatcgggcgactttgccctcatggcctattttgtcctcaaa
agcaggtgcacaagtaaaggcaacctaagcattaaagagatcaatgactttttagattca
gtagctatcaacaatgccagcaaacagaaggatcaggtgaaaaaaagccttttacaggtg
ataacccaaagctcggcgttggaacagaagtggcttattcgaatgatccttaaggatatg
aaacttggcattagcaaggaaacaatcctgaaggtttttcatccagatgcaccggaattt
tacaatgtcaccacaaatctggataaagtgtgcagggaacttcatgatacgtctgtgtcg
ctgagcgaggtgtccattaatatgttttccgcttttaaacctatgctggccgccgttgca
aatgtcggacaaatagaaaagcaaatgggcaaccggccgttctacatcgagaccaagctt
gatggtgaacgcattcagttgcacaaagctggggatgtatacaaatactttacgaggaac
tcttacgagtacacgcaacagtttggagcctctcccctggagggttcgctcacaccttac
attcacaacgtcttcaaacctcatgtcgtgaactgcatactggacggagagatgatggcc
tataaccctacggctgagaccttcatgcagaaaggcagcaagtttgacattaaaaggttg
atggacgactcggacttgcaaacctgcttttgtgtgtttgatgtccttttgttaaatgac
cagaaattgggaaatgaaccgctgaagaagcgttacgaaattcttcacaccatcttcacc
cccatcaaaggtcgaatccagctggtgtctaaatccgaaggtagaaccacacaagaagtg
gtgaacgctctcaatgaagccattgacagtcgggaagaggggattatgattaaggatccc
atgtctatctacaaaccggataaacgtggtaaagaatggctgaaaattaaacctgaatat
gtagatggtctgatggatgaactcgatctgttgatagttggtggctactggggtaaaggc
agaagaagcggaatgctctcgcattttctctgcgccgtagccgaggagccgagtcctggg
gagaagccgacggtgtttcacactatctgtcgcatcggatcgggctacactttaaaagag
ctttatgatctggggctgaagttggccaagtattggaaaatatacaacaaaaacagtcct
ccggcatccatcttgtgcggaacggaaaaaccggaggtctacatagaaccccggaattcc
gtgatcatacaagtcaaagcggcagagatcgtttccagtgatatgtacaaaaccaactgc
actttacgttttcccagaatagaacgaatccgagaagataaagaatggcaccagtgcatg
acattgcctgaactgagtcaataccgttccaaagcttctggaaagctggcgtccagacat
ctcaactaccaagaggatcagcctgaaaagaaaaagcgcaaaatagtggtcaaacccaag
aaaaccatcggtgtcattgaccacttcaaatctcaggatttatcagcggtcaccaaagag
acggatatgttcgaaggggtggagttttgcgtgatcaacggaaacgacgaacgttccaag
gcggagcttgagaaggacgtggcccgctgcggaggcatcgtcgtgcagaaccctggaaag
gatacgtactgtgtgatcgctgctgtgcaaaacatgagagtgaagaacctcatctcctca
aaccaacacgatgtggtgtgggccacttggcttgttgagtgtttggagaaaaagcaggtt
gtgccgtggcaaccgcgtcacatgatccacatgtcacctcccacaagggaacactttgcc
aaggaatacgataagtatggagacagttattacgtcgacacaaatgaacagcaggtcagg
gatgtgtttggaaggattggacccgtagatgaatctccatctgtggcacagatagaagaa
aagtttgcctgggatgacttgcttactagcatttttaggccttattgcgcatactttgat
cggtgtgccgacttaggagatgcacaaaccctcatccggggtacacgtctggacactcga
gctttagaatttcgattccatggtggtacagttgtggaggaactgaaggaaggaatctcg
catgtcatagtagatggagagggaaggattctggacctgaagacgctgagacgtctttat
actaagaagttcaaaatcgttcgggaatcgtgggtgaccgattccatcgaagcaggccat
gtagtgaatgacattgactacctcgtataa
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