Misgurnus anguillicaudatus (oriental weatherfish): 129430714
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Entry
129430714 CDS
T09481
Symbol
tardbpa
Name
(RefSeq) TAR DNA binding protein, like isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
manu
Misgurnus anguillicaudatus (oriental weatherfish)
Pathway
manu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
manu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129430714 (tardbpa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
manu03019
]
129430714 (tardbpa)
Messenger RNA biogenesis [BR:
manu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
129430714 (tardbpa)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
Motif
Other DBs
NCBI-GeneID:
129430714
NCBI-ProteinID:
XP_055044183
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All DBs
Position
13:21454761..21461353
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AA seq
402 aa
AA seq
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MTECYIRVAEDESEEPMEIPSEEDGTVLLSTVAAQFPGACGLRYRSPVSQCMRGVRLVEG
VLHAPEADWGNLVYVVNYPKDNKRKMDEMDAASAVKIKRGVQKTSDLIVLGLPWKTTEQD
LKDYFSTFGEVIMVQVKRDAKTGNSKGFGFVRFTDYETQAKVMTQRHMIDGRWCDCKLPN
SKYFLEQAGPDEPMRSRKVFVGRCTEDMSADELRQFFMQYGEVTDVFIPKPFRAFAFVTF
ADDQVAQSLCGEDLIIKGTSVHISNAEPKHNNSRQMMDRGRFGGFGGQGFSSNRSPNSNV
NFGALSLNPAMMAAAQAALQSSWGMMGMLAGQQNQTGASGSTPSGQNSGGRDQNPGYNAS
SNNYSTNSSASLGWGAGTNSASSGGFNSGFGSSMETKSSWGM
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagtgttacattcgcgtggcggaggatgaaagtgaggagcccatggagatcccg
tctgaggaagatggcactgtgctgttgtccaccgtcgccgcacagtttcccggtgcctgt
ggccttcggtaccggagcccggtgtctcagtgtatgagaggagtccgattggtggagggc
gttctgcacgcgcccgaagcagactggggaaacctggtgtacgtggtcaactatcctaaa
gataataagaggaagatggatgaaatggatgctgcatctgctgtcaagatcaaaagaggc
gtgcagaagacatcagacctgatcgttctgggtttgccatggaaaacgactgagcaagat
cttaaagattacttcagtacttttggagaggttatcatggtgcaggtgaagagagatgca
aaaacgggaaattctaaaggatttggctttgtaagatttacagactatgaaacacaagca
aaagtcatgacccagcggcatatgatcgatggaagatggtgtgactgtaaacttcccaac
tcaaagtatttcctggaacaggctgggccagatgagcctatgagaagccggaaagtgttt
gtgggccgctgcaccgaggacatgtctgccgatgagcttaggcagtttttcatgcaatac
ggcgaagtcacagacgtattcattcccaaacctttccgagctttcgccttcgttaccttt
gccgacgatcaggttgcccagtccttgtgtggtgaggacctgatcattaaaggaaccagt
gtgcacatctccaacgctgagcctaagcacaataatagtaggcaaatgatggatcgtggg
aggtttggggggttcgggggacagggcttcagcagtaatcgcagtcccaacagcaatgtg
aattttggggcgcttagcctgaatccagccatgatggcagccgctcaggcagcccttcag
agtagctggggcatgatgggaatgcttgcaggtcaacagaatcagacgggcgcctctggc
tccacccctagcgggcagaacagcggtggtagagatcagaacccgggttacaacgcgagc
agcaataactacagcaccaacagctcagctagtctggggtggggggcgggtaccaattcg
gcctcgagcggtgggttcaactccggctttggatctagtatggagacaaagtcgagctgg
ggaatgtag
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