Maribacter cobaltidurans: CJ263_18035
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Entry
CJ263_18035 CDS
T05023
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
marb
Maribacter cobaltidurans
Pathway
marb03030
DNA replication
marb03410
Base excision repair
marb03420
Nucleotide excision repair
marb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
marb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CJ263_18035
03410 Base excision repair
CJ263_18035
03420 Nucleotide excision repair
CJ263_18035
03430 Mismatch repair
CJ263_18035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
marb03032
]
CJ263_18035
03400 DNA repair and recombination proteins [BR:
marb03400
]
CJ263_18035
Enzymes [BR:
marb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CJ263_18035
DNA replication proteins [BR:
marb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CJ263_18035
DNA repair and recombination proteins [BR:
marb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CJ263_18035
NER (nucleotide excision repair)
GGR (global genome repair) factors
CJ263_18035
MMR (mismatch excision repair)
DNA ligase
CJ263_18035
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CJ263_18035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
Auto_anti-p27
RNA_lig_T4_1
HHH
EcoRI
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ASV31961
UniProt:
A0A223V9A4
LinkDB
All DBs
Position
4026593..4028587
Genome browser
AA seq
664 aa
AA seq
DB search
MSIEDKIKALRDELREHNYNYYVLDNPSISDYEFDMKLKELQDLEIKHPEYFDESSPTIR
VGGMVTKQFETIVHEHRMYSLDNSYSKEDLEEWEKRIQRNLGDAPVEYTCELKYDGASIS
ITYENGKLVRAVTRGDGFQGDDVTTNIKTIKSVPLQLKGDYPDKFDIRGEIVLPFEGFAK
MNEERITNGEEPYMNPRNTASGSLKLQDSALVAQRPLECLLYSIVGRNIGISTQFEMLEK
AREWGFKVPTVAKLCKSTQEVMDFVEHWDVNRHSMPYETDGVVVKVNSLQHQEELGYTAK
SPRWAMAYKFKAEQVFTVLNEITYQVGRTGAITPVANLQPVLLAGTTVKRASLHNADQIE
KLDIREGDTVFVEKGGEIIPKIIGVDFSKRPMDSKPTEYITECPECHTPLVRTPGDAKHY
CPNEYGCPPQITGRIQHYISRKAMDIEGLGGETVELLFKEGLIDDYADLYELTKDQLLPL
ERMAEKSAENLIQGVADSVKVPFERVLFALGIRYVGETVAKKLAKAYKTIDALMVATKED
LVSVDEIGDRIAESVVDFFQNPKNLDAIGRLRQKGVQLELSAEKLENQTDVLNGATFVVS
GVFETVSRDELKKLIEDNGGKVGSSISSKTGYLVAGDKMGPSKRTKAESLGIPIITEQEF
LAMI
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcgaagataaaatcaaggccttaagggacgagttgagggagcacaattacaac
tattacgttctggacaatccctcgatatccgactatgagtttgatatgaagttgaaggag
ctacaggacttggagatcaagcatcccgagtattttgatgaaagttcgcccaccattcgg
gtggggggcatggtgaccaaacaattcgaaaccattgtgcatgagcataggatgtactcc
ttggacaattcatattctaaggaagatctggaagaatgggaaaaaagaatacagcgaaat
ttaggtgatgccccggttgaatacacatgcgaacttaagtatgatggagcctccattagc
attacctacgaaaacggaaaattagtgagagcggtgacccgtggggacggttttcaaggc
gatgatgttactaccaacataaaaaccataaagtcggttcccttacaattaaaaggggat
tatcctgataaatttgatattcgtggggaaatagtattgccatttgaaggttttgcgaaa
atgaacgaagaacggattaccaacggggaggagccctatatgaatcccaggaatacggcg
tccggcagtctaaagttgcaggatagtgccctagtggcccaacgtcctttggaatgtctt
ctgtatagtattgttggaaggaatataggtatatcgacccagtttgaaatgttggagaag
gctcgtgaatggggttttaaggttccaaccgtggccaaattatgcaagagtacccaggaa
gtaatggactttgtggagcactgggatgtaaataggcatagtatgccgtatgaaacggac
ggggtggtggtaaaggtcaatagccttcagcaccaagaagagttaggctacacggcgaaa
tcccccagatgggcgatggcgtataaatttaaggcggaacaggtatttacggtacttaat
gaaattacctatcaggtggggcgcacgggcgccataacccctgtagctaatctgcagcct
gttctgttggcgggaactacagttaaacgtgcatccttgcataatgctgatcagattgaa
aaactggatattcgggaaggagataccgtatttgttgaaaaggggggtgaaattattccc
aagattattggggtggatttttctaaacgacccatggattccaaaccgacggaatatatc
acggagtgcccggaatgtcacaccccattggtacgaacaccgggagatgccaaacactat
tgtcctaatgaatatggatgtccaccacaaatcacggggcgaatacaacactatatttca
aggaaagccatggatatagaaggtttgggtggcgaaacggttgaattgctttttaaggaa
ggtttaattgacgattatgcggatttgtatgaattgaccaaggaccaattacttcctttg
gaacgaatggcggagaagtccgcagaaaacctgattcaaggtgttgcggattcggttaag
gttccttttgaaagagtcctgtttgccttgggtatacgatatgtaggggagactgtggcc
aaaaaactggcaaaagcctacaaaactattgatgcccttatggtcgctactaaggaggat
ttggtatctgtggatgaaattggtgatcgtattgcagaaagtgtggtcgacttttttcaa
aatcccaaaaatttggacgccatcgggcgattgaggcaaaaaggggtgcaactggagttg
tccgccgaaaaacttgaaaaccaaaccgatgtgttaaacggtgccacttttgtagtttcg
ggggtatttgaaacggtgagtagggacgagcttaaaaagctgattgaggacaatggtgga
aaagtaggttcctctatatcctccaaaacgggttatttggttgccggggacaaaatggga
cctagcaaaaggaccaaagcggagtcgttgggtatccctattatcacagagcaagaattt
ttagcaatgatttaa
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