Marinomonas arctica: IBG28_14835
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Entry
IBG28_14835 CDS
T06902
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mard
Marinomonas arctica
Pathway
mard03030
DNA replication
mard03410
Base excision repair
mard03420
Nucleotide excision repair
mard03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mard00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IBG28_14835 (ligA)
03410 Base excision repair
IBG28_14835 (ligA)
03420 Nucleotide excision repair
IBG28_14835 (ligA)
03430 Mismatch repair
IBG28_14835 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mard03032
]
IBG28_14835 (ligA)
03400 DNA repair and recombination proteins [BR:
mard03400
]
IBG28_14835 (ligA)
Enzymes [BR:
mard01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IBG28_14835 (ligA)
DNA replication proteins [BR:
mard03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IBG28_14835 (ligA)
DNA repair and recombination proteins [BR:
mard03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IBG28_14835 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IBG28_14835 (ligA)
MMR (mismatch excision repair)
DNA ligase
IBG28_14835 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IBG28_14835 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
DUF4796_N
DZR_2
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
QNT04962
UniProt:
A0A7H1J396
LinkDB
All DBs
Position
complement(3199310..3201328)
Genome browser
AA seq
672 aa
AA seq
DB search
MTHQQMLELIQQLNDYSYAYHVKDDPIVPDAVYDRDYRQLQDIEAKHPDWIQADSPTQRV
GEKPDSGFANVAHTVPMLSLDNAFDNESLSDFDQRIRKLLKVASITYCCEPKLDGLAISL
RYENGRLVRGVTRGDGLSGEDITSNIKTIYSVPLKLRTQTPPAVLEVRGEIYMPKDGFEK
LNALALEQGEKTFVNPRNAAAGSLRQLDPKITATRPLVMCAYSIGYVEGWDQPKSHYEGL
LQLNEWGFRTNDLMATAEGAQGCIEYYEMLNEKRADLSYDIDGIVYKVDQIALQNQLGFI
ARAPRWAIARKFPAQEEMTRVLGVDFQVGRTGAITPVARLEPVFVGGVTVSNATLHNKDE
IARLGVKVNDYVIVHRAGDVIPKVVQVVLDKRSADATEVVFPETCPVCGSDLEQVAGEAV
IRCTGGLVCGAQLKESLKHFVSRKAMDIDGLGDKLIEQLVDQELVKTPVDIFTLSEKKDT
LLAMERMGQKSVEKLLASIETAKNTQFNRFIYSLGIREVGEATARALTTYFTALEDLMAA
DQDALVEVEDVGPIVAQHVRLFFDQELNRETIKGLLAAGVVWEKKQPVSTDELPLSGKTY
VVTGSLSQFSRDQVKDKLQALGAKVSGSVSAKTDCLVAGEKAGSKLTKAQSLNVPIIDEA
GVIALLSQHGAI
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgacgcatcagcagatgctggagttgattcagcaacttaacgattacagctatgcttat
catgtaaaagacgaccccatcgttcctgatgcagtatatgaccgtgattatcgtcagctt
caggatatagaggccaaacacccagattggattcaagcggattctcccactcagcgtgtc
ggtgaaaagcccgacagcggttttgccaatgtcgctcatactgtgcccatgttgtctttg
gacaatgcttttgacaatgagtccttgtcagatttcgatcagcgtattcgtaaactgctt
aaagtggcgtctattacctattgctgtgagcctaaattagatggtttggcgattagttta
cgttatgaaaacggccgtttagttcgaggtgtgactcgtggtgatggtttgtctggtgaa
gacattacctcgaatattaaaacgatttattctgttccactgaagttacgcacgcaaacg
ccgcctgcggtgttagaagttcgtggtgaaatatacatgccaaaagacggctttgaaaag
ctcaatgctttagcgttagagcagggtgaaaagacgtttgttaacccacgtaatgcggcg
gcaggcagtttacgccagcttgaccctaagattactgcgactcgtcctttagtgatgtgt
gcctattcgattggctatgtggaaggttgggatcagcctaaaagccattacgaggggttg
ctacagttgaacgagtggggctttcgtaccaatgatctgatggcgacagcagaaggggcg
caaggctgtattgaatactatgagatgcttaacgaaaagcgtgctgatttgtcatacgac
attgatggtattgtttacaaagtggatcaaatagcgttacagaaccagttaggttttatt
gcccgtgcaccacgctgggcgattgctaggaagtttcctgcgcaagaggaaatgacccga
gtactcggtgtggactttcaagtgggtcgcacgggggcaattaccccagtcgcacgatta
gagcctgtgtttgttggcggtgtaaccgtttctaatgccaccttgcacaataaagatgag
atagcgcgtttgggtgtcaaagtgaacgattatgtgattgttcaccgcgctggcgacgtg
atacctaaagtcgttcaggtcgtgttagacaagcgctccgctgacgcgacagaggtagtg
tttccagaaacatgtcctgtgtgtggttccgacttagaacaagtggcaggcgaagctgtg
attcgctgtactggcggtttagtgtgtggggcgcagctaaaagaatccctaaagcatttt
gtttctcgtaaagccatggacattgatggtttgggcgataagttgattgagcagctggtg
gatcaagaactggttaaaacgccggtggatatttttactctcagtgagaagaaagacact
ctgttagcgatggagcgcatggggcagaaatcggtcgagaagctgcttgcctctattgag
acggcaaagaatacacagtttaaccgctttatttactcgttaggcattcgtgaggtaggc
gaagcgacggctcgcgccttaacaacttacttcacggcgctggaggatttaatggcggcc
gatcaagatgctttggtagaagtagaggatgtgggtcctattgttgcgcaacacgttagg
ctgttttttgatcaagaattgaatcgagaaactatcaaaggtctgctagcggctggggtt
gtctgggagaaaaagcagccagtgtcaacggatgaattgccgctttctggcaaaacctac
gtggtaaccggttctttaagtcaatttagtcgtgatcaagtaaaggataaattgcaggca
ttaggtgctaaagtcagtggttctgtatcggcgaaaacagactgcttagttgccggtgaa
aaagcgggttcgaaactcaccaaagcccaatcccttaatgtaccaatcattgatgaagct
ggggttattgccctgctgagtcaacatggagcaatataa
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