Marinobacter sp. CP1: ACP86_18680
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Entry
ACP86_18680 CDS
T04052
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mari
Marinobacter sp. CP1
Pathway
mari03030
DNA replication
mari03410
Base excision repair
mari03420
Nucleotide excision repair
mari03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mari00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACP86_18680 (ligA)
03410 Base excision repair
ACP86_18680 (ligA)
03420 Nucleotide excision repair
ACP86_18680 (ligA)
03430 Mismatch repair
ACP86_18680 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mari03032
]
ACP86_18680 (ligA)
03400 DNA repair and recombination proteins [BR:
mari03400
]
ACP86_18680 (ligA)
Enzymes [BR:
mari01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACP86_18680 (ligA)
DNA replication proteins [BR:
mari03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACP86_18680 (ligA)
DNA repair and recombination proteins [BR:
mari03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACP86_18680 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACP86_18680 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACP86_18680 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACP86_18680 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
RNA_pol_A_CTD
RNA_ligase
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AKV98011
UniProt:
A0A0K1UDZ2
LinkDB
All DBs
Position
4060426..4062462
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AA seq
678 aa
AA seq
DB search
MSKATPDIIQRVEELRSAIDDHNYRYYVLDDPRVPDAEYDRLFRELQGLETDYPELASDT
SPTRRVGSAAETSFEEVVHRLPMLSLDNAFSEDELRDFDRRVKDRLGITEDVEYVCEPKL
DGLAVSLHYENGALTTAATRGDGYSGEDITANIRTIPSVPLKLRGDDVPDLVEVRGEVYM
PKDGFEQLNRRLAERGEKTFVNPRNAAAGSLRQKKSTVTARRPLEMCAYSVAVTDESLLP
DTQWEGLKRVQSWGFRINPEMRKARGAEECLEAYSELMDKRDGLPYEIDGIVFKVNRLDQ
QKALGFVSRAPRWAIAQKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNA
TLHNMDEIRRLDVHIGDTVFIRRAGDVIPQVVKVVAEKRPSGAREVELPRQCPVCDSDVI
QIEGEAVARCSGGLFCPAQRKEAIRHYASRKALDIEGLGDKWIDIMVDQGMVETVADLYR
LTTDDLVKLERMGEKSAANLVAAIDRARNPVLWRFLYALGIREVGEATAKALAGHFGTLE
AIAAADEESLQTVPDVGPIVAGHICSFFEQTHNRETLDALREAGVRWQEEEVREGEKPLK
GQTWVLTGTLSGMTRDEAKEKLESLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLEIPV
LDEAGLVALLEEHGLGAG
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagccacgcccgacatcattcagcgtgttgaagaactccgttcggcgattgat
gaccataactaccgctattacgtgctggatgacccgcgtgttccagatgcggaatacgac
cggctgttccgggaattgcagggcctggaaaccgattatccagagttggcttcggacacg
tcgcccacgcggcgggttggcagcgccgcggaaaccagctttgaggaggtagtgcacagg
ctgcccatgctgtcgctggacaatgcgttcagtgaggacgaacttcgtgactttgaccgg
cgggtaaaagaccggctcggtatcactgaggacgtggagtatgtctgtgaacccaagctg
gacgggctggcggtgagcctgcactacgagaatggcgccctgactaccgccgccacccgg
ggggatggctattccggggaggacataaccgccaatatccgaaccattccctcggtgccg
ctgaagctccgtggcgacgacgtgcccgatctggtggaggttcgcggcgaagtctacatg
ccgaaggacggtttcgagcagcttaatcgccgcctggcggagcgtggcgagaagaccttc
gttaatccccgtaatgcggcggccggcagcctccggcagaaaaagtcgacggtaaccgcc
agacgccctctcgaaatgtgcgcctacagcgttgcggtaaccgacgaaagcctcttgccg
gatacccagtgggaggggctcaagagagtccagagctggggtttccgtattaatcccgag
atgcgcaaggccaggggcgcggaggaatgcctcgaagcctacagcgagctgatggacaaa
cgggacggactcccctacgaaatcgacggtatcgtcttcaaggtgaaccggcttgaccag
caaaaggccctgggttttgtatcccgggcccctcgttgggcgattgcccagaagtttccg
gctcaggaggaactcacggttatcgaggacgtggaattccaggtcggtcgtactggcgcg
gttaccccggttgcgaggttaaaacccgtgttcgtgggcggtgtaacggtgagcaacgcc
accctccataacatggacgaaattcgccgactggatgttcatatcggcgataccgtgttc
attcgccgcgccggagatgtgattccgcaggtagtcaaagtggtggccgaaaaacgcccc
tcaggcgcccgggaagtagaattgccccgacagtgcccggtgtgcgactcggatgttatc
cagatcgaaggtgaagccgttgcccgctgctctgggggcctgttctgccccgcgcagcga
aaggaagccattcgccactatgcctcccgcaaagccctcgatattgagggccttggagac
aagtggatagatatcatggtggatcagggcatggtggaaaccgttgccgatctgtatcgc
ctgaccaccgacgacctggtgaaacttgagcgaatgggagaaaagtcggcggccaatctg
gtggctgccattgatcgggccagaaaccccgtgctctggcggttcctttatgcccttggc
atccgggaggtgggggaggccaccgctaaagccctggcgggccacttcggaactctggag
gccattgctgcagcggatgaagagagccttcaaacggttccggatgtcgggccgatcgtt
gcgggtcatatctgtagctttttcgagcagacccacaatcgcgaaaccctggatgccctg
cgtgaagccggtgtgaggtggcaggaagaggaagtccgggagggagagaagcctctgaaa
ggccagacctgggtgctgaccggtacgctttccggaatgacacgggacgaagccaaagag
aagctggaatcccttggagccaaggtggccggaagcgtttctaaaaagacggcctgcgtg
gtggctggtgaggccgccggttccaagctggccaaggctgaacagttagagatacctgtt
cttgatgaagccgggctggtggcgttgctggaagagcacggcctgggcgcgggctaa
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