Marinobacter sp. JH2: MARI_09200
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Entry
MARI_09200 CDS
T06162
Symbol
ligA_1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
marj
Marinobacter sp. JH2
Pathway
marj03030
DNA replication
marj03410
Base excision repair
marj03420
Nucleotide excision repair
marj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
marj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MARI_09200 (ligA_1)
03410 Base excision repair
MARI_09200 (ligA_1)
03420 Nucleotide excision repair
MARI_09200 (ligA_1)
03430 Mismatch repair
MARI_09200 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
marj03032
]
MARI_09200 (ligA_1)
03400 DNA repair and recombination proteins [BR:
marj03400
]
MARI_09200 (ligA_1)
Enzymes [BR:
marj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MARI_09200 (ligA_1)
DNA replication proteins [BR:
marj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MARI_09200 (ligA_1)
DNA repair and recombination proteins [BR:
marj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MARI_09200 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MARI_09200 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
MARI_09200 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MARI_09200 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QBM16824
LinkDB
All DBs
Position
987573..989609
Genome browser
AA seq
678 aa
AA seq
DB search
MTQIPSEVQQRVDELRAALHDHNYQYYVLDDPKVPDAEYDRLFRELQALELEHPKLASDD
SPTRRVGSTANTSFAEVTHRVPMLSLDNAFSEEELQEFDRRVRDRLGAEEPIEYVCEPKL
DGLAVSLHYEKGLLTRAATRGDGTIGEDITANIRTIPSVPLRLRGNDYPDLVEVRGEVYM
PKAGFERLNKGLADQGEKTFVNPRNAAAGSLRQKKSTVTAKRPLEMCAYSMAVLDENELP
ATHWESLQLVKGWGFRINPEMRVATGAKACLEAYNDLMDKRASLPYEIDGIVFKVNRLDL
QTQLGFVSRAPRWAIAQKFPAQEELTTIEGVEFQVGRTGAVTPVARLKPVFVGGVTVSNA
TLHNMDEVRRLDVHIGDTVFIRRAGDVIPQVVKVVPEKRPENAEGVVMPAQCPVCESDIV
QIEGEAVARCSGGLYCPAQRKEAIRHYASRKALDIEGLGDRLIEVLVDDGMVTTVADLYR
LTKFQVSSLERMGDKSASNLIAAIDRSRNPVLWKFLYALGIREVGEATAKSLAAYFGTLE
AISEATEETLQQVPDVGPIVAGHIRSFFDQPHNQETLAALRETGVVWQEEQVASADEQPL
AGETWVLTGTLSQMTRDQAKAKLEGLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLGVK
VLDEDELLTFLGEHGVEI
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacacagatcccctcagaagtgcagcagcgcgtagacgagctacgcgctgcactccat
gaccacaactaccaatattacgtgctggatgaccccaaagttccggatgcggagtacgac
cgtttgttccgggagttgcaggcattagaacttgagcacccaaagctcgcctcggacgac
tcacccacgcgcagagtgggtagtacggccaacaccagttttgccgaggtaacccaccgt
gtaccgatgctctctctggacaatgccttcagtgaggaagagttgcaggaatttgatcgc
cgggtgcgcgatagactcggagctgaagagccgatcgaatacgtgtgtgaaccgaagctc
gacgggctggctgtaagcctgcattacgagaaaggcttgcttacccgagcggcaactcgc
ggtgacggaacgatcggcgaggacatcaccgccaatattcgaaccattccatcggtgccg
ctgaggttacgtgggaacgattaccctgatcttgtggaggttaggggagaggtttatatg
cctaaagccggtttcgaaaggctcaacaaggggctggcggaccaaggtgagaaaaccttc
gtaaacccccgtaatgcagccgccggcagcttgcggcaaaagaaatcgaccgtcacggcg
aagcggcctttagaaatgtgtgcatacagcatggcggttttggatgaaaatgagttgcca
gccacccactgggagagcttgcagctggtgaaaggctggggctttcggatcaaccctgaa
atgcgagtggcgactggggccaaagcttgtcttgaagcctacaacgacttaatggataag
cgggccagcttaccctatgagattgacggcattgtgttcaaggtgaaccggctggacctg
caaacgcaactcggctttgtgtcgcgggcacccagatgggccattgcccagaaattcccg
gctcaggaagagctcaccaccattgaaggtgttgaatttcaagtgggccggaccggtgcg
gtcaccccggttgcgcgtttgaaacctgtatttgtaggcggcgtgaccgtctcgaatgcc
acgcttcataacatggatgaagtgcgacggctggatgtgcacatcggtgatacggtcttt
atccgccgggcaggcgatgttattccgcaggttgttaaagtggtacccgagaagcgcccc
gagaatgctgaaggggttgtgatgcccgcgcaatgtcctgtgtgtgagtccgacattgtg
caaatcgaaggggaggcggtggcacgctgttcaggggggctatactgccccgcacagcgt
aaggaagccatacgccactatgcgtctcgtaaagcgctcgacatcgaaggcttgggtgat
cggttgattgaagtgctggttgatgacggcatggtaacgaccgttgccgatctttatcgt
ttaaccaaattccaggtctccagcttagagcgaatgggcgataaatctgccagcaacctt
attgccgcgattgaccgctcccggaaccctgtattgtggaaattcttgtacgcactcggt
attcgggaagtcggtgaggctacggcgaaatcgttggcggcgtacttcggtactttagag
gcgatttctgaggcgactgaggagacgctccagcaagtaccggatgtcggaccaatcgtt
gcggggcatattcgcagtttcttcgatcagcctcacaaccaggaaacacttgcagccctt
cgggaaacgggagtggtctggcaagaagagcaggtagcttccgctgatgagcagccctta
gcgggcgaaacctgggtcctgacgggtacgttgtcacagatgacgcgagatcaggcgaaa
gcaaagctcgaaggattaggggcaaaagtggcgggcagtgtttccaaaaaaacagcttgc
gtggtcgccggtgaagcggcgggctcaaagctcgcgaaagcggaacagcttggcgttaaa
gtgcttgatgaagatgagcttttgacctttttgggcgaacacggcgttgaaatttga
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