Microbacterium arborescens: QUC20_07775
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Entry
QUC20_07775 CDS
T09423
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mark
Microbacterium arborescens
Pathway
mark03030
DNA replication
mark03410
Base excision repair
mark03420
Nucleotide excision repair
mark03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mark00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QUC20_07775 (ligA)
03410 Base excision repair
QUC20_07775 (ligA)
03420 Nucleotide excision repair
QUC20_07775 (ligA)
03430 Mismatch repair
QUC20_07775 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mark03032
]
QUC20_07775 (ligA)
03400 DNA repair and recombination proteins [BR:
mark03400
]
QUC20_07775 (ligA)
Enzymes [BR:
mark01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QUC20_07775 (ligA)
DNA replication proteins [BR:
mark03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QUC20_07775 (ligA)
DNA repair and recombination proteins [BR:
mark03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QUC20_07775 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QUC20_07775 (ligA)
MMR (mismatch excision repair)
DNA ligase
QUC20_07775 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QUC20_07775 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
HHH_5
BRCT
HHH
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WJM17185
LinkDB
All DBs
Position
1632654..1634966
Genome browser
AA seq
770 aa
AA seq
DB search
MADGELPEITLDEARAEARDLIERITAARDAYYGRDAEVVDDATYDGWMRRLEALERWHP
ELQSQDSPTQTVGAAESTLFAPVTHAERMLSLDNVFSPEELTDWCMKASASAGRPVRWLS
ELKIDGLAISLRYENGVLTSAATRGDGRVGEDVTVNALRVAGIPQRLAGSGHPSLVEVRG
EIFIPVAEFAQLNALQAAMRDRVVDEARSRSRAFDEERARTSAERRFPAFANPRNAASGG
LRQQLDKKTGLELEASEARVRSLRLYVHGIGAWQNPPVSSQSEIYTLLAEWGLPISPHSQ
THESIQGVLDYVEHFGENRHSVEHELDGVVVKIDELALHDELGATSRAPRWAIAYKYPPE
QVNTKLLDIVVSVGRTGRATPFAVMAPARVAGSVVRQATLHNQDVVRAKGVLIGDTVVLR
KAGDVIPEVLGPVVELRNGTERAFVMPADCPECGSPLRPAKEGDIDLRCPNARSCPAQVR
GRVEHVGSRGALDIEALGEVTAAALTQPLGEAEPPLVTEAALFELTLDQLVPIEVIVRDS
ETGEPRVDDTTGEPVRRAPFRRNPSAAEKKEGLTGPQPSAQALKLLDELEKAKTKELWRF
LVALSIRHVGPVAARALAQWFGSIAAIRAATRDELAAVEGVGGIIADSLIDWFGVDWHRE
IVERWEAAGARLEVPGHPGPGAAVVEGGVLEGITVVATGSLEGYTREGAQEAILAAGGKA
GSSVSKKTDFVAAGPGAGSKLAKAEQLGVRIIDAAQFRVLVEQGPAALGS
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
gtggcagacggagaactccccgagatcactctcgacgaagcgcgcgcggaagcgcgtgac
ctgatcgaacggatcaccgcggcgcgcgatgcctactacggccgcgacgccgaggttgtc
gatgacgcgacgtacgacggctggatgcgccggctcgaggcgctcgagaggtggcatccc
gaactgcagtcccaagactcgccgacccagaccgtcggcgccgccgagtcgaccctgttc
gccccggtcacgcacgccgaacgcatgctgagtctcgacaacgtcttctcgcccgaagaa
ctgaccgactggtgcatgaaggcatcagcctctgccggacgcccggtgcgctggctctcc
gagctcaagatcgatgggctcgcgatcagcctgcgctacgagaatggcgtgctgacgtct
gctgcgacccgcggcgacgggcgcgtcggcgaggacgtgaccgtcaacgcgctgcgcgtc
gccggcatcccgcaacgactcgcgggctcgggacacccttccctcgtcgaggtccgcggc
gagatcttcatccccgtcgccgagttcgctcagctcaacgcgctccaggcggccatgcgc
gaccgggtggtcgatgaggcccgctcccgttcccgggcgttcgacgaggagcgcgcgcgt
accagcgccgagcgacgctttccggctttcgcgaacccccgcaacgcggccagcggtggc
ctgcggcagcagctcgacaagaagaccgggctcgaactggaggcctcggaggcccgtgtc
cgctcgctccgcctgtacgtccacgggatcggcgcgtggcagaacccgccggtgtcgtcg
cagagcgagatctacacgctcctcgccgagtgggggcttccgatcagtccccactcgcag
acccacgagagcatccagggggtgctcgactacgttgaacacttcggcgagaaccggcac
agcgtcgagcacgagctcgacggcgtcgtcgtgaagatcgatgagttggcgctgcacgac
gagctcggtgcgacgagccgggcgccgcggtgggcgatcgcatacaagtacccgcccgaa
caggtcaacaccaagctgctcgacatcgtcgtctcggtcggccgcacggggcgagccact
cccttcgcggtgatggcaccggctcgcgtcgcggggagcgtggtgcgccaggcgacgctg
cacaaccaagacgtcgtccgcgcgaagggcgtcctcatcggcgacacggtcgtgttgcgg
aaggcgggcgatgtgatccccgaggtgctcggaccggtggtcgagctgcgcaacggcacc
gaacgtgcgttcgtgatgcccgccgactgccccgagtgcgggtcgccgctgcgccccgcc
aaggagggcgacatcgacctccggtgtcccaacgcacgctcgtgccccgcacaggtgcgg
ggccgcgtcgagcacgtcggctcgcggggtgcgctcgacatcgaggcgctgggcgaggtg
acggcggcggcgctgacgcagccgctgggggaggccgagcctccgctcgtgaccgaagcg
gctctcttcgagctcactctcgaccagctggtgccgatcgaggtcatcgtgcgcgactcc
gagaccggcgaaccgcgcgtcgacgacacgacgggcgaaccggtgcggcgagctcccttc
cggcgcaacccctcggctgcggagaagaaggaggggctgaccggtccgcagccgtcggct
caggcgctcaagctcctcgacgagctcgagaaggcgaagacgaaggagctctggcggttc
ctcgtcgcgctcagcatccgccatgtcggtccggtcgcggctcgtgcgctcgcgcagtgg
ttcggctcgatcgcggcgatccgagcggcgacgcgcgacgagctcgcggcggtcgagggt
gtgggcggcatcatcgcggactcgctgatcgattggttcggggtcgactggcaccgcgag
atcgtcgaacggtgggaggcagccggagcccgtctcgaagtgccggggcacccgggtccg
ggcgccgctgtcgtcgagggaggagtgctcgaaggaatcacggtcgtggcgaccggatcc
ctcgagggctatacccgcgagggcgcccaggaggcgatcctcgctgccggcggtaaggct
ggctcgtccgtctcgaagaagaccgacttcgtcgccgccgggccgggcgcgggctcgaag
ctggcgaaggccgaacagctgggcgtgcgaatcatcgacgccgcgcagttccgcgtcctc
gtcgagcaggggccggccgctctcgggtcctga
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