Maribacter sp. 1_2014MBL_MicDiv: YQ22_18725
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Entry
YQ22_18725 CDS
T04570
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
marm
Maribacter sp. 1_2014MBL_MicDiv
Pathway
marm03030
DNA replication
marm03410
Base excision repair
marm03420
Nucleotide excision repair
marm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
marm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YQ22_18725
03410 Base excision repair
YQ22_18725
03420 Nucleotide excision repair
YQ22_18725
03430 Mismatch repair
YQ22_18725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
marm03032
]
YQ22_18725
03400 DNA repair and recombination proteins [BR:
marm03400
]
YQ22_18725
Enzymes [BR:
marm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YQ22_18725
DNA replication proteins [BR:
marm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YQ22_18725
DNA repair and recombination proteins [BR:
marm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YQ22_18725
NER (nucleotide excision repair)
GGR (global genome repair) factors
YQ22_18725
MMR (mismatch excision repair)
DNA ligase
YQ22_18725
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YQ22_18725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_ligase
HHH
RNA_lig_T4_1
TF_Zn_Ribbon
Motif
Other DBs
NCBI-ProteinID:
APA66167
LinkDB
All DBs
Position
complement(4391898..4393895)
Genome browser
AA seq
665 aa
AA seq
DB search
MIMKAKIEELRKELREHNHNYYVLDNPTISDYEFDMKLKELQDLEAKHPEFYDASSPSLR
VGGMITKNFATVVHEHRMYSLDNSYSKEDLEDWEKRIQRNLGDVPVEFTCELKYDGASIS
ITYEQGKLVRAVTRGDGIQGDDVTNNIKTIKSVPLQLKGDYPDKFDIRGEIVLPFDGFQK
MNEERIANGEEPYMNPRNTASGSLKLQDSSVVAQRPLDCLLYSIVGRNLNIDSQFHMLEK
AREWGFKVPTVAKLCKTTDEVMAFVEEWDVKRHELPYETDGVVIKVNSLQNQEELGFTSK
APRWAMAYKFKAEQVFTTLNEITYQVGRTGAITPVANLEPVLLAGTTVKRASLHNADQIE
KLDIRVGDTVFVEKGGEIIPKIIAVDLSKRPADSQPTEYIHECPECGTELTRTAGDAKHY
CPNEYGCPPQITGRIQHFISRKAMDIEGLGGETVELLFKVGLIDDYADLYKLTKEDVLPL
ERMAEKSAENLVNGVAESVKVPFERVLFALGIRFVGETVAKKLAKAYKNIDALKEATLEH
LTSVDEIGERIAQSVIDFFANEKNIDAIERLRSFGVQLSISEEKLQNQTDTLAGNTFVVS
GVFEILSRDELKKKIEDNGGKVGSSISSKTSYLVAGDKMGPSKLAKAEKLGIPIISEQDF
INMLA
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
ataattatgaaggcaaagattgaagaactaagaaaagagttgcgagagcataatcacaat
tattatgtgttggataacccgaccatttcagattatgaattcgatatgaaattgaaagaa
ttacaggatttggaagctaaacatcctgaattttatgatgccagttcgccatcattacgt
gtaggtggtatgatcaccaagaattttgcaaccgtagttcatgagcatagaatgtactct
ttagataattcatactctaaagaagatttagaagattgggagaaacgtattcagcgtaat
ttgggagacgtacctgttgaatttacttgtgagttaaaatatgatggcgcatctatcagt
ataacttatgaacaaggtaaactggtaagagcggttacccgtggtgacggaattcaaggg
gatgatgttaccaataatataaaaaccattaaatcggttccgctccagttaaaaggagat
tatccagataagtttgatatacgaggagaaatagtattaccgttcgacggatttcagaaa
atgaacgaagaacgcattgccaatggagaagagccgtatatgaatccgcgaaatacggca
tcgggtagtttaaaacttcaagatagcagtgttgttgcacagagacctttagattgtttg
ctgtacagtattgtaggtagaaacctgaatattgactctcaatttcatatgttggagaaa
gcacgagaatggggctttaaagtaccaactgttgccaaactttgtaaaactacagatgag
gtaatggcatttgttgaggagtgggatgtaaaacgccatgagttgccttatgaaaccgat
ggtgtggtcattaaagtaaatagccttcaaaaccaagaagaacttggttttacctcaaaa
gccccacgatgggcaatggcgtataaatttaaggcagaacaggtttttaccactttaaat
gaaattacctatcaagtagggcgtacaggcgcaataacaccggtagccaatctagaaccg
gtattattggcaggtacaacggtaaaaagagcatcgttacataatgccgaccaaatagaa
aaattggatattagggtaggcgataccgtatttgtagaaaaaggcggagaaattatccct
aagattatagcggtagatctttcgaaaagaccagcagattcccaaccaacggaatatatt
catgaatgtccagaatgtggtaccgagcttactcgtacagcgggtgatgcaaaacattat
tgcccaaatgaatacggttgtccgccacaaataaccggtagaattcagcatttcatttct
agaaaggcgatggatattgaaggtttgggtggcgagacggtagaattactgtttaaagta
gggttgatagacgattatgccgatttatataaactcaccaaagaagatgttttaccctta
gaacgaatggcagagaagtctgccgaaaatttagtaaacggagtagcggaatctgtaaaa
gtaccttttgaacgtgtgttgtttgctttaggtattcgctttgtaggcgagaccgtggct
aagaaattggcaaaagcatataaaaacatagatgctttaaaagaagcgacgctagagcat
ttaacttctgtagatgagattggggagcgcatagcgcaaagtgtcatcgacttttttgcg
aacgagaagaatatagatgccatagagagattacgaagctttggcgtacaattatcaata
tctgaagaaaagttacaaaatcagaccgataccttggcgggtaatacctttgtggtttcc
ggagtatttgagattttaagtagagatgagctcaaaaagaaaatagaggataatggtggt
aaagtaggctcttctatatcttctaaaactagttatttggttgcgggagataaaatggga
cctagtaagcttgcaaaggcagaaaaactgggtatacccattatcagtgagcaagatttt
ataaacatgttagcatag
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