Marinagarivorans cellulosilyticus: MARGE09_P3188
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Entry
MARGE09_P3188 CDS
T07868
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
marq
Marinagarivorans cellulosilyticus
Pathway
marq03030
DNA replication
marq03410
Base excision repair
marq03420
Nucleotide excision repair
marq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
marq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MARGE09_P3188
03410 Base excision repair
MARGE09_P3188
03420 Nucleotide excision repair
MARGE09_P3188
03430 Mismatch repair
MARGE09_P3188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
marq03032
]
MARGE09_P3188
03400 DNA repair and recombination proteins [BR:
marq03400
]
MARGE09_P3188
Enzymes [BR:
marq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MARGE09_P3188
DNA replication proteins [BR:
marq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MARGE09_P3188
DNA repair and recombination proteins [BR:
marq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MARGE09_P3188
NER (nucleotide excision repair)
GGR (global genome repair) factors
MARGE09_P3188
MMR (mismatch excision repair)
DNA ligase
MARGE09_P3188
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MARGE09_P3188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
5_3_exonuc
RUBY_RBDX
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BCD98987
UniProt:
A0AAN2BLE9
LinkDB
All DBs
Position
complement(4068305..4070335)
Genome browser
AA seq
676 aa
AA seq
DB search
MTEAVLTENDTVIQQQYEALKQEIQRHNVAYYVKDEPSIPDAEYDRLMRQLLDVEQQHPS
WVTPDSPSQRVGATPLDSFQSVTHLQPMLSLGNAFNDDDMRDFDRRIQDRLKTSIAVHYV
CEPKFDGLAVSLLYRDGLFERAATRGDGTTGEDISQNVRTLKNVPLKLAGNYPAVLEVRG
EIYMPLKGFEALNQSARENGQKTFVNPRNAAAGSLRQLDSRITATRPLVFNAYSVGEFDG
ELPATHFETLQLLRDLGFVVSDLAEKVDSIEGCLDYYTRMAAKRDALPFDIDGLVFKVDD
FALQRRLGFVARAPRFAIAQKFPAQEEMTTLKAVEFQVGRTGAITPVARLEPVFVGGVTV
ANATLHNRDEVERLGVMVGDTVIIRRAGDVIPQIAEVVLERRPETASPIEFPAQCPVCGA
DTSQVPGEAVIRCSGGLSCAAQSKEAIKHFASRKAMDIDGLGDKLVEQLVDEGLIANVAD
LYQLTLVPLVGLERMAEKSAQNLLDALEKSKSTTLARFLYALGIREVGQTTAATLAQHLG
SLQAITQATAEQLQEIPDVGPVVAEYVELFFKQESNLALLEALQAAGVHWPAPTVSQNQP
LAGKTVVLTGTLETMGRSEAKERLLALGAKVAGSVSAKTYLVVAGAKAGSKLTKAQDIGL
DVRNEEEFIAWLEQFE
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagctgtattaacggaaaatgacacagtgattcaacagcagtacgaagccctt
aaacaggaaatccagcgtcataacgttgcttactatgtaaaggatgagccttctattcca
gatgcagaatacgatcgtttaatgcgtcaattattggatgtcgaacagcagcaccctagt
tgggtaacgcccgattccccctcgcagcgcgtaggagcgaccccgctcgatagctttcaa
agcgtaacgcatttacagccgatgttatcgttaggtaatgcctttaatgacgatgatatg
agggattttgatcgacgtatacaagaccgcttaaaaacatctatcgcggtacattatgtg
tgcgaaccaaaatttgatggccttgcggtaagtttgctctatcgcgatgggctattcgag
cgcgcagctacaaggggtgatggcacaaccggcgaagatatttcgcagaatgttcgcacc
cttaaaaacgtaccgctaaagcttgccggtaattaccctgcagtgcttgaagtgcgcggc
gaaatttacatgcccttaaaggggtttgaggcgctgaaccaatcggcgcgtgagaatggc
caaaaaacatttgtaaacccgcgcaatgcggcagctggtagcttaaggcagttggattct
cgcattaccgcaacaaggccgttggtgtttaatgcttattcagtgggtgagtttgatggc
gagctgccggcaacgcactttgaaaccctgcaattactgcgtgatttagggtttgttgtg
agtgatcttgcagagaaagtcgactctatcgaaggctgcttagactattacactcgaatg
gcagccaagcgagatgctctgccttttgatatagacggcttggtttttaaggttgatgac
tttgcattacagcgtcgcttaggttttgttgcaagggcgccacgttttgcgatcgcgcaa
aaattccccgcccaagaagaaatgacaacccttaaagcggtcgaatttcaggtagggcgt
accggtgcgattacccctgttgcgcgcttagagccggtgtttgtgggcggtgttaccgta
gcgaacgccacgctgcacaaccgcgatgaagtggagcgccttggggtgatggtgggtgat
accgttattattcgtcgagcaggcgatgtaatcccacaaattgccgaggttgtactcgag
cgccgccctgaaacggctagcccaatagaatttcccgcgcaatgccctgtttgtggtgcc
gatactagccaagttcctggtgaagcggtgattcgctgcagcggtggcttatcgtgtgca
gcacaaagtaaagaggccattaagcactttgcaagccgtaaagcgatggatattgatggt
ttgggcgataagctcgtagagcaattggttgatgaaggcttgatcgctaatgttgccgat
ttataccagttaacactggtaccgcttgttggtttagagcgcatggccgagaaatcagcc
caaaacttattggatgcattagaaaaaagtaaaagtacgactttggcgcgctttttatat
gccttaggtattcgagaagttggccaaacaaccgcggctacgcttgcacagcatctaggt
agcttgcaggccattacgcaagctacggctgaacagctgcaagaaattcctgatgttggg
ccggttgtcgctgaatatgtcgaattgttttttaaacaagaaagtaatttagctttacta
gaggctttgcaggctgcaggagtgcattggccagcgccgacggtatcgcaaaatcaacct
ttagcgggtaaaaccgtagtactaacgggaacgttagaaactatggggcgcagcgaagcc
aaagaacgcttattggcgttgggcgctaaagtagcgggtagtgtgtcggcaaaaacctat
ttagtggtggcaggggcaaaagcgggcagcaaactcacaaaagcgcaggatattgggctc
gatgtgcgcaacgaagaggagtttattgcgtggttagaacaattcgaataa
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