Minisyncoccus archaeiphilus: MNSC_02840
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Entry
MNSC_02840 CDS
T10788
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
marw Minisyncoccus archaeiphilus
Pathway
marw03030
DNA replication
marw03410
Base excision repair
marw03420
Nucleotide excision repair
marw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
marw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MNSC_02840 (ligA)
03410 Base excision repair
MNSC_02840 (ligA)
03420 Nucleotide excision repair
MNSC_02840 (ligA)
03430 Mismatch repair
MNSC_02840 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
marw03032
]
MNSC_02840 (ligA)
03400 DNA repair and recombination proteins [BR:
marw03400
]
MNSC_02840 (ligA)
Enzymes [BR:
marw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MNSC_02840 (ligA)
DNA replication proteins [BR:
marw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MNSC_02840 (ligA)
DNA repair and recombination proteins [BR:
marw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MNSC_02840 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MNSC_02840 (ligA)
MMR (mismatch excision repair)
DNA ligase
MNSC_02840 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MNSC_02840 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
Zn_ribbon_RlmA
RNA_pol_A_CTD
ECM11
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
BFT94276
LinkDB
All DBs
Position
368371..370440
Genome browser
AA seq
689 aa
AA seq
DB search
MQNQEEVRKRIDSLKDLIDHHRYLYHVLDKQEISDAALDSLKKELFDLEMAYPQFITPDS
PNQRVGGKPLESFEKTTHKKPMTSFYDAFNREDMNDWEERNKKLLSQQEISNLSYYCEPK
LDGLAIELTYEDGVLVLGSTRGDGKIGENVTMNIRTIEAIPLKLKSTEEVVRKLKERGLH
HVVTLIESEGLSEIIVRGEAVLTKKEFQRVNQEREEQGLSLYANPRNLAAGSIRQLDPKV
TASRKLDSNIYSLITDLGQTTHEEEHLILDAMGFKTNNKFNRYCQNLDEVFEYYHYWEEN
RDSLPYEVDGITVLVNDNLIFKKLGIIGKAPRAGIALKFPLLEVVTKVNDITVQVGRTGA
MTPVAVLEPVNVGGVIVSRATLHNQKEVERLSLKIGDTVVIGRAGDVIPEVIRAFPELRT
GEEKDFQMPQDCPSCGTKLIKGDEEVVWRCPNDHCFARKKKYFNHFIARSAFNIEGLGGK
VIERLLEEGMVKDPADLFDLTEGDLLPLERFGEKSAKKLISAIQEKKDVSLARFIYSLGI
RNVGQKTANDLADRFDSLEDIQKLTLEDLEGIDDVGPIVAKSIMEWFSNEGNLVFIEKLR
SKGVKYFIEKKAGNRLQGLRFVLTGALDSLSREVAEKAIRDQGGEFSSSVSGKTDFVIVG
RDPGSKYDKAKELGVKTIDETEFLKMIND
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatcaagaagaagtgagaaaaaggatagacagtctgaaggaccttatagaccat
cacagatatctctatcatgtgttggacaagcaagagatatctgatgcagctcttgactcc
ttgaaaaaggagctttttgatttagaaatggcatatcctcagtttattactcccgattct
cctaatcagagagtgggaggtaaacccttagaatcttttgagaagacaacgcataagaag
ccaatgacttcattttacgacgctttcaatagggaagatatgaatgattgggaagaaagg
aataagaagcttcttagccagcaagaaatttccaatctttcctattactgcgaacctaag
cttgatggtctcgctattgaacttacttatgaagatggcgtcctggttctaggttctacc
cgaggcgatggtaagataggggagaatgttactatgaatatcagaaccatagaagctatt
ccattaaagcttaaatctactgaggaggtggttagaaagctgaaagagagggggttgcat
catgttgttactctcattgaatcagagggattatcagaaattattgtcagaggggaggct
gttttaactaaaaaagaattccagcgagtcaatcaagaaagagaagaacaaggactttct
ctttatgctaatcctcgtaatttagcagctggttcgattcgtcagcttgatcctaaagtc
actgcttctagaaaattagattctaatatctactcccttattaccgacttaggacagacc
actcacgaagaagaacaccttattcttgatgctatgggattcaagactaataataagttc
aataggtattgccaaaatctagacgaggtctttgagtactatcattattgggaggaaaat
agggactctttgccatatgaagtggatggtattacagtcttagtcaatgataatttaatt
tttaaaaagcttggaattatcggtaaagccccaagagcaggaatagccttgaagtttcct
ctattagaagttgttacaaaagttaatgatataactgttcaagttggaaggaccggagcc
atgactcctgtagccgttttagaacctgttaatgtagggggagttattgtcagtagggcc
actctgcacaatcagaaggaggtagaaaggctttccttaaagataggggataccgtagta
attgggagagcgggggatgttattcctgaggttatcagggcttttccagaactcagaacc
ggagaagaaaaggattttcagatgcctcaagattgcccttcttgtggcactaagctaatt
aaaggtgatgaagaggttgtctggagatgtcccaatgatcactgctttgctaggaagaag
aagtatttcaatcattttattgccagaagtgcttttaatatagaggggttgggaggaaaa
gttatcgaaagattattagaagaaggtatggtcaaagatccagctgatctttttgacctc
acagaaggagaccttcttccattagagagattcggggagaagtcagctaaaaagttgata
tctgccattcaagagaagaaagatgtttctcttgcgagattcatttattctctaggaatc
aggaatgttggacagaagacagccaatgatttagctgataggttcgatagcctagaagat
atccagaaacttaccttagaagacttagagggtattgatgatgttggtcctatagttgct
aaatcaattatggaatggttctctaatgaaggcaatctagtctttattgagaagttaagg
agtaagggtgttaagtattttatcgaaaaaaaggcaggaaataggcttcaggggcttcga
ttcgtcttaactggggctttagactcattgtcgagagaagtggctgagaaggccattcgt
gaccaaggaggagagttctcttcttctgtctcaggaaagactgatttcgtcattgttggt
agagaccctgggtcaaaatatgataaggcaaaagagttgggggtcaagactattgacgaa
acagaattcttgaagatgataaatgattaa
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integrated database retrieval system
