Marixanthomonas sp. SCSIO 43207: INR76_13865
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Entry
INR76_13865 CDS
T07485
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
marx
Marixanthomonas sp. SCSIO 43207
Pathway
marx03030
DNA replication
marx03410
Base excision repair
marx03420
Nucleotide excision repair
marx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
marx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
INR76_13865 (ligA)
03410 Base excision repair
INR76_13865 (ligA)
03420 Nucleotide excision repair
INR76_13865 (ligA)
03430 Mismatch repair
INR76_13865 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
marx03032
]
INR76_13865 (ligA)
03400 DNA repair and recombination proteins [BR:
marx03400
]
INR76_13865 (ligA)
Enzymes [BR:
marx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
INR76_13865 (ligA)
DNA replication proteins [BR:
marx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
INR76_13865 (ligA)
DNA repair and recombination proteins [BR:
marx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
INR76_13865 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
INR76_13865 (ligA)
MMR (mismatch excision repair)
DNA ligase
INR76_13865 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
INR76_13865 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
5_3_exonuc
DUF72
Auto_anti-p27
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
UAB81171
LinkDB
All DBs
Position
complement(2951763..2953757)
Genome browser
AA seq
664 aa
AA seq
DB search
MNTEAKINQLREALRKHNYNYYVLDNPTISDFEFDQKLKELQQLEAQHPEFYDANSPTLR
VGGEVTKNFDTVTHEHRMYSLANSYSKEDLEDWEKRIKKLVDGTVEYVCELKYDGASINL
TYENGSLQKAVTRGDGFQGDDVTTNVKTINSVPLKLKGDFPDKFEIRGEIILPFEGFTQM
NAERVEAGEEPYRNPRNTASGSLKLQDSSEVAKRPLECLLYSIKADRLPISTQYECLKKA
REWGFKVPEVAKLTKSIDEVLNFINYWDVHRHELPYETDGVVVKVNSLYQQEELGYTAKA
PRWAMAYKFKAEQVTTKLNAITYQVGRTGAITPVANLEPVELAGTIVKRASLHNADQIEK
LNVREGDTVFVEKGGEIIPKIIGVDFTERDPNSNPTKYRTTCPECGTELIRNEGEALHYC
PNSEGCPPQIIGRIQHYISRKAMDIEGLGGETVALLVTNNLITTYADLYELTKEDVIPLE
RMADKSAENLINGIEASKQIPFERVLFALGIRYVGETVAKKLAKHYKSIDALANATEEEL
ISVDEIGDRIAESVRLFFTSEKNIHTIERLKNYGVQLEISAEKLANQTNKLNGDTFVVSG
VFHQVSRTELKKLIEDNGGKVSSSISGKTNYVVAGDNMGPSKKTKAENLGVPIISEEDFL
QMIS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaataccgaagcaaaaatcaatcaactgcgtgaagcattacgcaaacataattacaac
tattacgtactcgataatcctactatttcagattttgaatttgatcaaaaactgaaagag
cttcaacaactggaagcccaacaccccgagttttatgacgccaattcacctaccttgcga
gtaggtggcgaagtgactaaaaattttgatacggtgactcatgaacatcgtatgtattca
ttggcaaattcatattcaaaagaagatctggaagattgggaaaaacgaataaaaaagttg
gttgacggtaccgttgagtatgtttgtgaacttaagtatgacggtgcttcaattaatcta
acatatgaaaacggaagtttacaaaaagcagttacaagaggagatggttttcaaggagat
gatgtaactaccaatgtaaagactataaattcagttcctttaaaactcaaaggtgatttt
ccagataaatttgaaataagaggcgaaattatactgccctttgaggggtttacccaaatg
aatgcagagcgggttgaagccggtgaagaaccttacagaaatccaagaaacacagcttcc
ggaagcttaaagttacaagatagtagtgaagtggcaaaacgcccgttagaatgtttgttg
tatagtattaaagcagacagattgccaatttctacccaatacgaatgcttgaaaaaagcc
agagaatgggggtttaaagttccagaagttgccaagcttaccaaaagtatagatgaggtg
cttaactttataaactattgggatgttcaccgtcacgaattgccctatgaaacagatggt
gttgtagtaaaagtgaacagtctgtatcaacaagaagaattgggttacaccgccaaagca
cctcgatgggcaatggcttacaagtttaaagctgaacaggtcactaccaagttaaatgcc
ataacctatcaagtaggacgtacaggagctatcacacccgttgcaaatctagagcccgta
gaattggcgggtactattgtaaaacgagcatcattgcacaatgccgatcaaattgaaaaa
ctaaatgtgcgtgagggagatacggtttttgttgaaaaaggcggagaaataattccaaaa
attattggtgttgattttaccgaacgcgatcctaattcaaaccctaccaagtacagaact
acgtgtcccgaatgcggaaccgaattaatacgtaacgaaggtgaagcgcttcattactgt
cctaattctgaaggttgcccgccgcaaattataggccgcattcagcactatatttcaaga
aaagcaatggatattgaaggacttggtggagaaacggtagctttgctagtaaccaataac
ctaattactacttatgccgatctgtatgagcttaccaaggaagatgtgattccgttggaa
cgaatggcagataaaagtgcagaaaacctaataaatggtatagaagcttcaaaacaaatt
ccgtttgaaagagtgttgtttgctttgggtatcaggtatgtaggtgaaacagtcgcaaaa
aagctagctaaacattataaaagtattgatgctcttgcaaatgctactgaagaagaattg
atttcggtagatgaaataggtgatcgtatagctgaaagtgttcgcttgttttttacttca
gaaaaaaatatacacacaattgagcgcttaaagaactatggcgtgcaattggaaatttca
gcagaaaaattggctaaccagactaataagctaaatggggatacttttgtagtttcagga
gtttttcatcaagtttcacgtacagagctaaaaaaacttattgaggataatgggggtaaa
gtgtctagttctatctcgggaaaaaccaattatgtggttgccggtgataatatggggcca
agtaaaaaaaccaaagccgaaaatttgggcgttcctattatttcagaagaagatttttta
caaatgatttcctga
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