Massilia sp. YMA4: DPH57_04295 Help Entry DPH57_04295       CDS       T05528                                  Name (GenBank) DNA ligase (NAD(+)) LigA   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism masy  Massilia sp. YMA4 Pathway masy03030   DNA replication masy03410   Base excision repair masy03420   Nucleotide excision repair masy03430   Mismatch repair Brite KEGG Orthology (KO) [BR:masy00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     DPH57_04295    03410 Base excision repair     DPH57_04295    03420 Nucleotide excision repair     DPH57_04295    03430 Mismatch repair     DPH57_04295  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:masy03032]     DPH57_04295    03400 DNA repair and recombination proteins [BR:masy03400]     DPH57_04295 Enzymes [BR:masy01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      DPH57_04295 DNA replication proteins [BR:masy03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      DPH57_04295 DNA repair and recombination proteins [BR:masy03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      DPH57_04295    NER (nucleotide excision repair)     GGR (global genome repair) factors      DPH57_04295    MMR (mismatch excision repair)     DNA ligase      DPH57_04295   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       DPH57_04295 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT Nlig-Ia BRCT_2 DUF6688_C DUF4796_N DZR_2 Motif Other DBs NCBI-ProteinID:  AXA90458 UniProt:  A0A7U5XW35 LinkDB All DBs Position 966260..968593 Genome browser AA seq 777 aa AA seqDB search MSKQTPAERAAWLTAELNRHLHAYHVLDAPTIPDAEYDKLFIELQQIEAAHPELVAPDSP TMRVGAPPLGQFEPVTHAVPMLSLNNGFTDEDIENFDRRVREGLDAVEVEYAAEVKFDGL AINLRYENGVFVRAATRGDGYTGEDVSANIRTIRAIPLRLHGDDLPAVLEVRGEVLMFKA DFNAMNERQRAAGQKEFVNPRNAAAGALRQLDSRITAERKLRFFAYGIGELVGAELPQTH SALLDWYDKLGLPVAKERAVVRGKDGLLDYYARIGQGRPAMPYEIDGVVYKTNRLADQRA LGFVSRAPRFALAHKFPAEEALTTVQAIEVQVGRTGAITPVARLVPVFVGGVTVTNATLH NEDEVRRKDVRVGDTVIVRRAGDVIPEVLAVVLERRPTPEPAPYVLPNTCPVCGSHVVRE EGEAVARCSGGLTCAAQRKEAIRHFAGRRMMDIEGLGDRYIDSLVECNLVHGVADLYSLT LEDLLQMKRMADERDGTTPETVKQGKVATKWADNLLQAIESSKRPPLERLLFALGIRHVG ESTAKTLADWLGRFELVRQAPAALLRVLPDIGGTVAESIADFFAEEKNQQAIDALLAAGV TPQGEHAPKAQLREKLDPVQLLAALAIPKLTEPRARQLLEQAGTFETLASRRTFDVYGLP ATVAGALEEWMAVPAQREALLRLDRLRADLLAQLPETAAAEGHLSGKTFVLTGTLPTMSR DAAGALIEAAGGKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVTILDEAGLLALLGK NT seq 2334 nt NT seq  +upstreamnt  +downstreamnt atgtcgaaacagacccccgccgaacgcgcggcctggctgacggcggagctgaaccgccac ctgcacgcctaccacgtgctggacgcgccgacgattccggacgccgaatacgacaagctg ttcatcgagctgcagcagatcgaggcggcccatccggaactggtggcgcccgattcgccg acgatgcgcgtgggcgcgccgccgctggggcagttcgaaccggtcacgcacgcggtgccg atgctgtcgctgaacaacggcttcacggacgaggacatcgagaacttcgaccgccgcgta cgggaaggcctggatgccgtggaggtggagtatgccgccgaagtgaaattcgacggcctg gcgatcaacctgcgctacgagaacggcgtgttcgtgcgggccgccacgcgcggcgacggc tacacgggcgaggacgtgtcggccaacatccgcaccatccgcgccatcccgctgcgcctg catggcgacgatttgccggcggtgctggaggtgcgcggcgaggtgctgatgttcaaggcc gatttcaacgcgatgaacgagcgccagcgcgccgccggccagaaggagttcgtcaatccg cgcaacgcggcggccggcgcgctgcgccagctcgactcgcgcatcaccgccgagcgcaag ctgcgcttcttcgcctacggcatcggcgaattggtgggcgcggagctgccccaaacgcac agcgccctgctggactggtacgacaagcttggcctgccggtggcgaaggagcgcgcggtc gtgcgcggcaaggacggcctgctggactactacgccaggatcggccagggccgcccggcg atgccgtacgagatcgacggcgtggtctacaagaccaatcggctggccgaccagcgcgcg ctgggcttcgtctcgcgcgcgccgcgtttcgcactggcccacaaattcccggccgaggag gcgctgacgacggtgcaggccatcgaggtgcaggtgggccgcaccggcgcgatcacgccg gtggcgcgcctggtgccggtgttcgtcggcggcgtgaccgtcaccaatgccacgctgcac aacgaggacgaggtgcgccgcaaggacgttcgcgtgggcgacaccgtgatcgtgcggcgc gccggcgacgtgattccggaagtgctggccgtggtgctggagcggcgccccacgcccgag ccggcgccgtacgtgttgcccaatacctgcccggtgtgcggctcgcacgtggtgcgcgag gaaggcgaggcggtggcgcgctgctccggcggcctgacctgcgcggcgcagcgcaaggag gcgatccgccacttcgccggccggcgcatgatggacatcgaaggtctgggcgaccgctac atcgacagcctggtcgaatgcaacctggtgcacggcgtggccgacctctatagcttgacc ctggaagacctgctgcagatgaagcgcatggccgacgaacgcgacggcaccacgccggaa acggtcaagcagggcaaggtcgcgaccaagtgggccgacaacctgctgcaggcgatcgag tccagcaagcggccgccattggagcggctgctgttcgcgctgggcattcgccacgtgggc gagtcgaccgccaagacgctggccgactggctgggccgcttcgagctggtgcggcaggcg ccggcagcgctgctgcgggtgctgccggacatcggcggcacggtggccgaatcgatcgcc gacttctttgccgaagagaagaaccagcaggccatcgacgcgctgctggcggccggcgtg acgccgcagggcgagcacgcgccgaaggcgcagctgcgcgagaagctggacccggtccag ctgctggcggcgctggcgatcccgaaactgacggagccacgcgcccgccaattgctcgag caggcaggcacgttcgaaacgctggcgagtcgccgcacgttcgatgtgtacggcctgccg gccacggtggcgggcgcgctggaggaatggatggccgtgccggcgcagcgcgaggcgctg ctccggctggaccgcctgcgcgccgacctgctggcccagttgccggaaacggcggcggcc gaaggtcacctgagcggcaagaccttcgtgctgacgggcaccttgccgaccatgagccgc gacgcggccggcgcgctgatcgaggcggcgggcggcaaggtgtcgggctccgtgtcgaag aagacgtcgtacgtggtggcgggcgccgaggccggcagcaagctggccaaggcggaagag ctgggcgtgacgatcctggacgaggcgggcctgctggcgctgctgggcaagtaa

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