Pseudoduganella armeniaca: C9I28_17540 Help Entry C9I28_17540       CDS       T05378                                  Name (GenBank) DNA ligase (NAD(+)) LigA   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism masz  Pseudoduganella armeniaca Pathway masz03030   DNA replication masz03410   Base excision repair masz03420   Nucleotide excision repair masz03430   Mismatch repair Brite KEGG Orthology (KO) [BR:masz00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     C9I28_17540    03410 Base excision repair     C9I28_17540    03420 Nucleotide excision repair     C9I28_17540    03430 Mismatch repair     C9I28_17540  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:masz03032]     C9I28_17540    03400 DNA repair and recombination proteins [BR:masz03400]     C9I28_17540 Enzymes [BR:masz01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      C9I28_17540 DNA replication proteins [BR:masz03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      C9I28_17540 DNA repair and recombination proteins [BR:masz03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      C9I28_17540    NER (nucleotide excision repair)     GGR (global genome repair) factors      C9I28_17540    MMR (mismatch excision repair)     DNA ligase      C9I28_17540   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       C9I28_17540 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT Nlig-Ia BRCT_2 DUF6688_C DUF4796_N DZR_2 Motif Other DBs NCBI-ProteinID:  AVR97243 UniProt:  A0A2R4CC82 LinkDB All DBs Position complement(4034227..4036560) Genome browser AA seq 777 aa AA seqDB search MSKQTPAERAAWLTAELNRHLHAYHVLDAPTIPDAEYDKLFIELQQIEAAHPELVAPDSP TMRVGAPPLGQFEPVTHAVPMLSLNNGFTDEDIENFDRRVREGLDAVEVEYAAEVKFDGL AINLRYENGVFVQAATRGDGYTGEDVSANIRTIRTIPLRLHGDGLPAVLEVRGEVLMFKA DFAAMNERQRAAGQKEFVNPRNAAAGALRQLDSRITAERKLRFFAYGIGELVGADMPETH SALLDWYEKLGLPVAKERAVVRGKGGLLDYYAKIGQGRPAMPYEIDGVVYKTNRLADQRA LGFVSRAPRFALAHKFPAEEALTTVQAIEVQVGRTGAITPVARLVPVFVGGVTVTNATLH NEDEVRRKDVRVGDTVIVRRAGDVIPEVLAVVLERRPTPEPAPYVLPNTCPVCGSHVVRE EGEAVARCSGGLTCAAQRKEAIRHFAGRRMMDIEGLGDRYIDSLVECNLVHGVADLYKLT LDDLLQMKRMADERDGTTPETVKQGKVATKWADNLLLAIEASKRPPLERLLFALGIRHVG ESTAKTLADWLGRFELVRQAPEALLRVLPDIGGTVAESIADFFAEEKNQQAIDALLAAGV TPQGEHAPKAQLGEKLDPVKLLAALAIPKLTEPRARQLVEQGVTFETLAGRRTFDVYGLP ATVSAALEEWMAVPDNRAALARLDGLRNELLAQLPQVAAAEGPMSGKTFVLTGTLPTLSR DAAGALIEAAGGKVSGSVSKKTSYVVAGAEAGSKLAKAEELGVTILDEAGLLALLGK NT seq 2334 nt NT seq  +upstreamnt  +downstreamnt atgtcgaagcagacccccgccgaacgcgcggcctggctgacggcggagctgaaccgccac ctgcacgcctaccacgtgctggacgcgccgacgatcccggacgccgagtacgacaagctg ttcatcgagctgcagcagatcgaagcggcgcaccccgagctggtggcgcccgattcgccg acgatgcgcgtgggcgcgccgccgctggggcagttcgagcccgtcacgcacgcggtgccg atgctgtcgctcaataacggcttcaccgacgaggacatcgagaacttcgaccgccgcgtg cgcgaagggctggatgccgtggaggtggagtatgccgccgaagtgaaattcgacggcctg gccatcaacctgcgctacgagaacggcgtgttcgtgcaggccgccacgcgcggcgacggt tacacgggcgaggacgtgtcggcgaacatccgcaccatccgcaccatccccctgcgcctg cacggcgacggcctgccggccgtgctggaggtgcgcggcgaggtgctgatgttcaaggcc gacttcgccgcgatgaacgagcgccagcgcgccgccggccagaaggaattcgtcaacccg cgcaacgcggctgccggcgcgctgcgccagctcgactcgcgcatcacggccgaacgcaag ctgcgcttcttcgcctatggcatcggcgaactggtcggcgcggacatgccggagacgcac agcgcgcttctggactggtacgagaaactgggtctgcccgtggcgaaggagcgcgctgtg gtgcgcggcaagggcggcctgctggactactacgccaaaatcggccagggccgcccggcc atgccgtacgagatcgatggcgtggtctacaagaccaaccggctggcggaccagcgcgcg ctgggcttcgtctcgcgcgcgccgcgcttcgcgctggctcataaattcccggccgaggaa gcgctgacgacggtgcaggccatcgaagtacaggtgggccgcaccggcgcgatcacgccg gtggcacggctggtgccggtattcgtcggtggcgtcaccgtcaccaacgccacgctgcac aacgaggatgaagtgcggcgcaaggacgtgcgcgtgggcgacaccgtgatcgtgcggcgc gccggcgacgtgattccggaagtgctggccgtcgtgctggagcggcgcccgaccccggag ccggcgccgtatgtgctgccgaatacctgcccggtgtgcggctcgcacgtggtgcgcgag gaaggcgaagccgtggcacgctgctccggcggcctgacctgcgcggcgcagcgcaaggaa gcgatccgccacttcgccggccggcgcatgatggacatcgaaggcctgggcgaccgctac atcgacagcctggtcgagtgcaacctggtgcacggcgtggccgacctgtataaactgacg ctggacgacctgctgcagatgaagcgcatggccgacgagcgcgacggcaccacgccggaa acggtcaagcagggcaaggtggcgaccaagtgggccgacaacctgctgctggcgatcgag gccagcaaacgcccgccgctggagcggctgctgttcgcgctgggcatccgccacgtcggc gaatcgaccgccaagacgctggccgactggctgggccgcttcgagctggtgcgccaggcc ccggaagcgctgctgcgcgtgctgcccgatatcggcggcaccgtggccgagtcgattgcc gacttcttcgcggaagaaaagaaccagcaggccatcgacgcgctgctggcggcgggtgtg acgccgcagggcgagcatgcgcccaaggcgcagttgggcgagaagctcgatcccgtcaag ctgctggccgcgctggccatcccgaagctgaccgaaccgcgcgcgcgccagctggtcgag cagggcgtcacgttcgagacgctggccggccggcgcacgttcgacgtgtacggcctgccg gcgaccgtgtccgccgcactggaagagtggatggcggtgccggacaaccgggccgcgctg gcacggctggacgggctgcgcaacgaactgctggcgcagctgccgcaagtcgcggcggcg gaagggccgatgagcggcaagaccttcgtgctgacgggtaccttgccgaccctgagccgc gacgcggccggcgcgctgatcgaggcggccggcggcaaggtgtccggctcggtgtcgaag aagacatcgtacgtggtggccggggccgaggccggcagcaagctggccaaggccgaggag ctgggcgtgacgatcctggacgaggcgggcctgctggcgctgctgggcaaataa

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