KEGG   Molothrus ater (brown-headed cowbird): 118688519
Entry
118688519         CDS       T11569                                 
Symbol
SMNDC1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
mate  Molothrus ater (brown-headed cowbird)
Pathway
mate03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mate00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118688519 (SMNDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mate03041]
    118688519 (SMNDC1)
Spliceosome [BR:mate03041]
 Complex A
  U2 snRNP components
   U2 related factors
    118688519 (SMNDC1)
 Complex B
    118688519 (SMNDC1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    118688519 (SMNDC1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR DUF2067 TraX-like
Other DBs
NCBI-GeneID: 118688519
NCBI-ProteinID: XP_036242064
UniProt: A0A7L3UW41
LinkDB
Position
8:complement(25964872..25974709)
AA seq 238 aa
MSEDLAKQLASYKAQLQQVEAALSGNADNEDLLKLKKDLQEVIELTKDLLSTQPSETLAS
SDSSACALPSHSWKVGDRCMAIWSEDGQCYEAEIEEIDEENGTAAVTFAGYGNAEVTPLF
NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcagaggaccttgctaagcagttggccagctacaaagctcagctccagcaagtcgag
gctgccttatctggcaatgcagacaatgaggatttactgaaactgaagaaagacttacag
gaagtcatagagttaaccaaagatctcctttcaacacaaccttcggaaaccctcgcgagt
tccgacagctccgcgtgcgccctccccagtcactcctggaaggttggggacaggtgtatg
gccatatggagtgaggatggacagtgttacgaagctgagattgaagaaatagatgaggag
aatggaacagctgcagttacatttgctggatatggcaatgctgaagtcacacctctgttc
aacctcaagcctgtggaagagggaaggaaagcaaaagaggacagtggcaacaaacccatg
tccaaaaaagagatgatagcccagcaacgagagtataaaaagaagaaagctttgaaaaaa
gctcagagaattaaagaacttgaacaggaacgagaggaccagaaagtcaagtggcaacag
tttaacaacagagcctattctaaaaacaaaaaaggccaggtgaaaaggagtatttttgct
tcccctgagagcgtaactggcaaggttggcgttggaacatgtggaattgcagacaaacct
atgacacagtatcaagatacctctaaatataatgtcaggcatctgatgcctcagtaa

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