Mesocricetus auratus (golden hamster): 101844954
Help
Entry
101844954 CDS
T08306
Symbol
Smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
maua
Mesocricetus auratus (golden hamster)
Brite
KEGG Orthology (KO) [BR:
maua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
maua03036
]
101844954 (Smchd1)
03400 DNA repair and recombination proteins [BR:
maua03400
]
101844954 (Smchd1)
Chromosome and associated proteins [BR:
maua03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
101844954 (Smchd1)
DNA repair and recombination proteins [BR:
maua03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
101844954 (Smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
101844954
NCBI-ProteinID:
XP_005082624
UniProt:
A0A1U7QWP7
LinkDB
All DBs
Position
Unknown
AA seq
2007 aa
AA seq
DB search
MASKGARDPGGLSAAGSGDDAGVDGCRTVYLFDRRGKESELGDRALQVSERAGYAGFRAS
VCQTIGISSEEKFVITTTNRKEITCDNFDETVKDGVTLYLLQSVDQSLLTATKERIDFLP
HYDTLVKSGMYEYYASEGQNPLPFAFAELIDNSLSATARNVGVRRIQIKLLFDETQGKPA
VAVVDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGG
KQAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPADSVHIT
NDDERFLHNLIVEEKDKDSFTTVVITGVQPEHIQYLKNYFHLWTRQLTHIYHYYIHGPKG
NEINTAKEVGPSNNIDIEISLFEKGKTPKIVNLREIQDDMQTLYISTASDSFEFKAHFEG
DGVVEGVIRYHPFLYDRETYPDDPSFPSKLRDEEDDDDCYIAERAARGKRPIFECFWNGR
LIPYTSVEDFDWCAPPKKRGLAPIECFNRISGALFTNDKFQVSTNKLTFMDLELKLKDKN
TLFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTIFKGIITRPDLPSKKQGPWATY
SAIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYD
EIKTVPIAKLDRTVAEKTIKKYVEDEMARLPDRLSITWPEGDELLPNEVRPAGTPIGALR
IEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHTSSGNKEIISHISQHGGKWPYWFKKM
ENIQKLGNYTLKLQVVLNESNADTYAGRSLPSKAIKFSVKEGKPEKFSFGLLDSPFRVGV
PFNIPLELQDEFGHTTQLVSDIQPVLEASGLSLCYKEITKGPNCVIQGVVAKGPVNSCQG
KNFNLKVILPGLKEDSQTLKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVVDESDN
ITAQPKLIVHCKFLGAPSLPLYTVDCSSSGTSILTGSAIQVQNIKKDQTLTARIEIPSCK
DVSPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMRNLIFQMYDEGER
EINITPSLAEKIKVNWTPEVNKEHLLQGLLPDVQVPTSVKDVRYCQVSFQDDHVSLESAF
TIRPLPDDPKHLKCELKGGKTVQMGQELQGEIVVMVADQYGNQISAFSSDSLSTLSIAGV
GLDNSNLKITLEAKTQSISVRGIRFTPGPPGHKDLCFTWREFSDFIRVHLVSGPPTKLLL
IDWPELKEYIPVINGRQLQNPLIVQLCDQWDNPALVANVRINIIKASNLRLLPANQQHKT
DDKGRANLGVFTVTAPRGEHTMQVKGIYNKSTIEGPTIKLMILPDPEKPIRLNVKYDKDA
SFIAGGIFTDFMVSVISEGGNVIKNINPTRISMKMWKLSSGMSQPPPNAETFSCNKIKDN
DKEDGCFYFREKTIPSKVGTYCIQFDFMIDKTHVLNSEQVIIDVLPNQPMKLVPDVQPAT
PAVSNVRSIASRTLVKDLHLSITDNYGNHTGMNLVGIVVATIKGFNEEDTDTPLFIGKVR
TLEFPFVNGSAEITTLVLAENSPGRDSTEYFIIFEPRLSTLSRSLEPYSLPFMFYNDVKK
QQQMAALTKEKDQLSKSIIMYRSLFDANKQLVDEMKCQVEDAKLKEAQLRNELKAHNIDI
PIAPQIPHIEALLEKKITEQNELKKKPRRSCTLPNYTKRGGDVLGKIAHLAQIEDDRAAM
VISWHLASDMDCVVTLTTDAARSIYDETQGRQQVLPLDSIFRKTLPDWKRPLPHFRNGKL
HFKPFGDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTL
LTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPRQCVVLGKQIDLLQQYRTAVCKL
GSVNQDLNNQLQYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSFCQSPKIEL
IECPIPTKKMRRESTRQNRRPKGDVPN
NT seq
6024 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgaagggcgcccgcgatcccggaggcctctcggcggcgggctccggggacgac
gccggagtcgacggctgtaggacggtgtacttgtttgaccggcgcgggaaggagtcggag
ctcggggaccgcgcactgcaggtctcggagcgcgcaggctacgcggggttccgcgcttcg
gtgtgtcagacaattggcatttcatctgaagaaaagtttgttattacaactacaaacagg
aaggagattacttgtgataactttgatgaaaccgttaaagatggagtcactctatacttg
ctacagtcagttgaccagtcactattaacagcaacaaaagaaagaattgacttcctaccc
cactatgatactttggttaaaagtggcatgtatgaatattatgcaagtgaaggacagaat
cctttgccatttgcttttgcagaattaattgacaattcattgtcagctactgctcgtaat
gttggtgttaggagaatacagatcaaattgctatttgatgaaacacaaggaaaacctgct
gtcgcagtggtagataatggaagaggaatgacctctaagcagcttaacaactgggctgtg
tataggttgtcaaaatttacaagacaaggtgactttgaaagtgatcattcagggtatgtt
cggccagtaccagttcctcgcagcttgaatagtgacatttcctattttggtgttggaggc
aaacaggcagttttctttgttgggcaatcagccagaatgataagcaaacctgcagactcc
caggatgttcatgagcttgtactttctaaagaagactttgagaaaaaggaaaaaaataaa
gaggcaatatatagtggatacattagaaacagaaagccagctgattctgttcacattaca
aatgatgatgaaagattcctgcacaatcttattgtagaggagaaagacaaagatagcttt
actactgtggttattacaggggtgcagccagaacacatacagtacttgaaaaactatttc
catctttggacacgacagttaacgcatatttatcattactatattcatggaccaaaggga
aatgaaataaatacagcaaaagaagttggaccttccaacaatattgatattgaaatttct
ttgtttgaaaaagggaagacacctaagattgtcaacctaagggaaatacaagatgacatg
caaacattgtatataagcacggcatctgatagttttgagttcaaggctcactttgaagga
gatggtgtagtggaaggggttatccggtatcatcccttcttgtatgatagagaaacttac
cctgatgatccaagctttccatcaaaactaagagatgaagaagatgatgatgactgctac
atagccgagagagcagcaagagggaaaagacctatttttgagtgcttctggaacggacgc
ttaattccatatacatcagtggaagactttgactggtgtgctcctcctaagaagagaggg
cttgccccaattgagtgctttaatagaatatctggtgcattattcactaatgacaaattt
caggtcagcacaaataaactgacatttatggatcttgagctgaaattgaaagataagaac
accctttttacaagaattttaaatggacaggagcagagaatgaaaattgacagagaattt
gctttatggctgaaggactgtcatgaaaagtacgacaaacaaataaaatttacaattttt
aaaggaataattacccgtccagatcttccctctaaaaaacaaggcccttgggcaacgtac
tcagcaatagagtgggatggaaagatatacaaagcgggacaactggtcaagacaatcaag
acacttcctctcttttatggaagcatagtaagatttttcctttatggtgatcatgatgga
gaagtatatgctacaggaggtgaagtccagatagcaatggagccccaggcgctatatgat
gaaatcaaaactgttcccattgcaaagctggataggacagttgctgagaaaacaattaaa
aaatatgtagaagatgaaatggcaaggctccctgacagattgtctataacttggcctgaa
ggagatgaattattgccaaatgaagttagacctgctggaaccccaattggtgcgctaagg
atcgagatactgaacaagaagggggaggcaatgcagaagctgccggggacaagtcacgga
gggtcgaaaaagctgctggtggagcttaaagtcatactgcacacttcaagtggaaataaa
gaaatcatttcacatatcagtcaacatgggggaaaatggccttactggtttaaaaaaatg
gaaaatatccagaaactgggtaattatacattgaaattacaagtggtattgaatgaaagt
aatgcagacacgtatgcaggaagatcactgccatctaaagcaataaagttctctgttaaa
gagggcaagccagagaagttctcatttggtcttctggattccccctttcgtgttggagtt
ccattcaatattcctttggagttacaagatgaatttggtcacaccacccaactagtatct
gatattcagccagttcttgaagcaagtggtctgtctttatgttacaaagaaataaccaaa
ggcccaaattgtgtaattcaaggtgttgtagctaagggtccagttaactcttgtcaaggc
aagaattttaatctgaaggttattcttcccggtctaaaagaagattcacagactttgaaa
attagattgctacctggtccccctcatcgactaaaagtgaaacctgattcagaaattcta
gttatagagaatggaacagctttcccgtttcaagtggaagttgtggatgagtcagacaac
ataacagcacaaccaaaactgattgtccactgtaagtttttaggtgctccaagcctgccg
ctctacactgtggattgcagtagctctgggaccagcatcctaacagggtcagcaattcaa
gttcagaacattaagaaagatcagacactgactgccaggattgagatacctagttgtaaa
gatgtgtcgcctgtggaaaagactatcaagttactccccagtagccatgttgctcgcctg
cagatatttagtgttgagggacaaaaggcgatccagattaaacatcaggatgaggttaat
tggatagcaggtgatgtaatgcgaaatctaatttttcaaatgtatgatgaaggagaaaga
gaaatcaatattacaccatctttggcagaaaaaattaaagttaactggactcctgaagtt
aacaaagaacacctgctacaaggtctgcttcctgatgtgcaagtaccaacatctgtgaaa
gatgtgcgctattgccaggtttcgttccaagatgaccatgtgtccctggaaagtgctttt
acgatcaggccacttcctgatgatcccaaacatttaaaatgtgagttaaaaggaggaaaa
acggtgcagatgggccaagagcttcaaggagaaatagttgttatggttgcagatcagtat
ggaaatcagatttcagcattttcatcagattctttgtctactttgtcaattgctggagtt
ggacttgataactctaacttgaaaatcactttggaggccaaaacacaaagtataagtgtg
agaggcatcaggtttactccaggtcctcctgggcataaggatctctgtttcacttggcga
gagttttctgactttatacgagtgcaccttgtttctggacctccaaccaagctgcttctc
atcgactggccagagctaaaagagtacattccagtcatcaatggaagacaattacagaac
cctctcattgttcaactttgtgatcagtgggataatcctgcattagttgcgaatgttaga
ataaatatcataaaagctagcaatttaaggctattacctgcaaaccagcagcataaaaca
gatgataagggcagagctaatctgggagtgttcactgttactgctccaaggggggaacat
actatgcaggttaaaggcatctataataagagtaccatagaaggacctacaattaagtta
atgattcttccagaccctgaaaaacccattcgtctcaatgttaaatatgacaaagatgcc
tcttttatagcaggtggcatattcactgattttatggttagtgtgatctctgaaggtggt
aatgttatcaaaaatattaatccaacacgaatttccatgaagatgtggaagctgtccagt
ggcatgagccagccgccaccaaatgcagaaacatttagttgtaataaaataaaagataat
gacaaagaagatggctgcttctatttcagggaaaaaacaatccctagcaaagttgggacc
tactgtatccagtttgattttatgatcgataaaacacatgtgctcaacagtgaacaggtt
ataattgacgttctgcctaatcagcctatgaagttggttcctgacgtccaaccagctacc
ccagctgtttctaatgttcgctcaattgccagcaggaccttggtcaaagacctacatctc
agtattacagataattatggtaatcatactggaatgaacttggttggcattgtagtagct
accattaaaggttttaatgaggaggacactgataccccactcttcatcgggaaagttagg
acacttgaatttccctttgtgaatggatctgctgaaatcacaactctagtgctggcagaa
aatagtcctggaagggacagtactgaatattttattatctttgagcctcggctatcaact
ttatcaagatcattagagccatacagcctgccattcatgttttacaatgatgttaaaaag
cagcaacaaatggcagcacttacgaaggaaaaggaccagttatctaagtccatcattatg
tatagaagtctctttgatgccaacaagcagctagttgatgagatgaaatgccaagttgaa
gacgcaaaattaaaagaagcccagctgcgaaatgaacttaaagcacacaatattgatatt
cctatagcaccacagatacctcacattgaagcacttttggaaaagaagataacagaacaa
aatgaacttaaaaaaaagcccagaagatcatgtactcttccaaactacactaagcgtggt
ggagatgttttgggaaagatcgcgcatctagcacaaattgaagatgatcgagctgcaatg
gtcatctcttggcacctggcaagtgacatggactgcgtcgtcaccctgaccactgacgca
gcacgctctatctacgatgaaactcaagggcgtcagcaggtgttgccccttgattctatt
tttaggaaaactcttccagattggaaaagacctctacctcatttccgaaatggcaaatta
cattttaaaccctttggagatccagtctttgcccgagatttgttaacattcccagataat
attgagcattgtgaaacagtttttggtatgctgttaggagacaccattattttggataat
ctagatgcagccaatcattatagaaaagaggttgttaaaatcacacactgtcccacatta
ctgactagagatggagatcgaattagaagtaatgggaagtttgggggccttcagaataaa
gcccctccaatggacaaacttcggggaatggtctttggagctccaataccgaggcagtgt
gtggtcttggggaaacaaatagacctccttcagcagtaccgcactgctgtgtgcaagctg
ggctctgtgaaccaggacttgaacaatcagttgcagtaccttcacacccctgacatgaag
aagaaaaagcaagagctggatgaacaggaaaaaaacctgaagctaatagagcaaaaactt
ggtatgactccgacacggaagtgtaatgactcattttgtcagtctccaaagattgagttg
atagagtgtccaattcctactaaaaaaatgaggagagaatccactagacaaaatagaaga
ccgaaaggtgatgtgccgaactga
DBGET
integrated database retrieval system
