Microbacterium aurugineum: KV397_08615
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Entry
KV397_08615 CDS
T10179
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
maug Microbacterium aurugineum
Pathway
maug03030
DNA replication
maug03410
Base excision repair
maug03420
Nucleotide excision repair
maug03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
maug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KV397_08615 (ligA)
03410 Base excision repair
KV397_08615 (ligA)
03420 Nucleotide excision repair
KV397_08615 (ligA)
03430 Mismatch repair
KV397_08615 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
maug03032
]
KV397_08615 (ligA)
03400 DNA repair and recombination proteins [BR:
maug03400
]
KV397_08615 (ligA)
Enzymes [BR:
maug01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KV397_08615 (ligA)
DNA replication proteins [BR:
maug03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KV397_08615 (ligA)
DNA repair and recombination proteins [BR:
maug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KV397_08615 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KV397_08615 (ligA)
MMR (mismatch excision repair)
DNA ligase
KV397_08615 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KV397_08615 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
UPL17804
LinkDB
All DBs
Position
complement(1769778..1772111)
Genome browser
AA seq
777 aa
AA seq
DB search
MPENISLEDARTEAEELTTRILDAKEAYYGRDTSLVDDFTYDGWMHRLEELERLHPELQG
QDSPTQMVGAAEATGLATIEHAERMLSLDNVFSVDELRDWAAKTEAAAGRRVAWLTELKI
DGLAINLRYENGVLTSAATRGDGRVGEVVTENALRLPEIPYRLSGEGHPEIVEVRGEVFI
PVAAFERLNAAQASYRDRAYADALAKWEARSGVKKPFDEEKARTAAARRFPSFANPRNAA
SGGLRQQIDKKNGLELEAGLLRIESLSLYVHGIGAWTNPPVAAQSEVYEVLAGWGLPTSP
HTKVCGTIDDVVAFVEYFGEHRHDIEHELDGIVVKVDELELHAELGATSRAPRWAIAYKY
PPEEVQTTLLDIVVSVGRTGRATPFAVMAPAHVAGSVVRQATLHNKDVVKAKGVLIGDTV
VLRKAGDVIPEVLGPVVERRDGTEREFVMPVECPECGTPLRAMKEGDIDLRCPNARSCPA
QVRGRVEHIGSRGALDVEALGEVTAAALTQPTSPAIPPLETEAGLFALTLEQLVPIELFV
RDAETGLPKEDDDGVVKTRAPFRRNPTPAERKSGLEGPQPSSQALTLLAELEKAKTKDLW
RLLVSLNIRHVGPVAARALAQWFGSLDAIRAATRDELAAVEGVGGIIADSVLDWFEIDWH
QEIVQQWADAGVQWSTPGHPGPGGAVPAGGVLEGLTIVATGSLDGYTREGAQEAIIKAGG
KAASSVSKKTDFVAAGPGAGSKLAKAEELGLRILDAAQFHVLVTEGPEALPPASEGS
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
gtgccggagaacatctcgctggaagacgcccgaaccgaagccgaggagctgaccacccgc
attctcgatgcgaaagaggcctactacggccgagacacctcgctcgtcgacgatttcacg
tatgacgggtggatgcaccggctcgaagaactcgagaggcttcatcccgagcttcagggg
caggactcgcccacgcagatggtcggcgccgccgaggccacaggcctcgcgaccatcgag
cacgccgagcgcatgctcagcctcgacaacgtgttctccgtcgacgagctgagggactgg
gcggcgaagaccgaagccgcggccggccgtcgcgtcgcatggctcaccgaactgaagatc
gatggcctcgcgatcaacctccggtacgagaacggagtcctgacctccgcggcgacgcgt
ggtgatggacgagtgggggaggtcgtcaccgagaacgccctgcgtctcccggagatcccg
tatcgtctgagcggcgagggacaccccgagatcgtcgaggtgcgcggtgaggtgttcatc
ccggtcgcggccttcgaacgcctcaatgccgcgcaggcgagctaccgcgatcgcgcctac
gccgatgctctcgcgaagtgggaagcgcggagcggggtcaagaagcccttcgacgaagag
aaggcgcgcaccgccgccgcgcgacgcttcccgtccttcgcgaatccacggaacgcggcc
agtggagggctccgtcagcagatcgacaagaagaacgggctcgagctcgaagcgggactt
ctacgcatcgagtccctgtcgctctacgtgcacggtatcggcgcgtggacgaatcctccc
gtcgcagcgcagagcgaggtgtacgaagtgctcgccggatggggcctgccgacgagcccg
cacacgaaggtctgcggcacgatcgacgacgtcgtcgcgttcgtcgagtacttcggcgag
catcggcacgacatcgagcatgagctcgacggcatcgtggtcaaggtcgacgagctcgag
ctgcacgctgaactcggagccacgagtcgtgcgccgaggtgggcgatcgcctacaagtac
ccgccggaagaggtgcagaccacgctgctcgacatcgtggtctcggtcggtcgtacaggt
cgtgcgacccccttcgccgtcatggcgccggcgcacgtcgccggttccgtggtgcgtcag
gccacgctgcacaacaaggacgtggtcaaagccaagggcgtgctgatcggcgataccgtc
gtgctgcgcaaagccggtgatgtcatccccgaggtcctcggacccgtggtcgagagacga
gacggcacggagcgcgagttcgtgatgcccgtcgaatgccccgagtgcggcacacctctt
cgggcgatgaaggagggcgacatcgacctgaggtgcccgaacgcccgttcctgccccgca
caggtccgcggtcgcgtcgagcacatcggctcacgcggggcactcgatgtcgaagctctc
ggtgaggtcaccgcagccgcgttgacgcagccgacctcaccggcgatcccgcctctcgag
acggaggcgggcctgttcgccctcaccctcgaacaactcgtgccgatcgaactcttcgtg
cgcgatgccgagaccgggcttccgaaggaggatgacgacggggtcgtcaagacgcgtgcg
cccttccgcaggaatccgaccccggctgagaggaagtccggtctcgaggggccgcagccc
tcctcgcaggcgttgacgctcctcgctgagctcgaaaaggcgaagacgaaggacttgtgg
cgtctgctcgtgtcgctgaacatccgtcacgtcgggccggtcgcggcgcgcgcactcgcc
cagtggttcggttctctcgacgcgatccgcgctgcgacgcgcgacgagctcgccgccgtg
gagggggtcggggggatcatcgcggattcggtcctcgactggttcgagatcgactggcac
caggagatcgtgcagcagtgggcggacgccggtgtgcagtggtcgacgcccggtcacccc
ggtccgggtggtgcggttcccgccggcggcgtcctggaaggcctgaccatcgtcgccacc
ggctcgctcgacggatacacccgggagggcgctcaggaggccatcatcaaggcggggggc
aaggcggcatccagcgtctcgaagaagacggacttcgtcgctgccgggccgggtgccggg
tcgaagctggcgaaggccgaagagctcggactccggattctcgacgcagcccagttccac
gtgctggtgacggaagggccggaggcgcttcctcccgcaagcgagggttcgtga
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