Mycobacterium avium subsp. avium: MAA44156_00833
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Entry
MAA44156_00833 CDS
T10718
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mavm Mycobacterium avium subsp. avium
Pathway
mavm03030
DNA replication
mavm03410
Base excision repair
mavm03420
Nucleotide excision repair
mavm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mavm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MAA44156_00833 (ligA)
03410 Base excision repair
MAA44156_00833 (ligA)
03420 Nucleotide excision repair
MAA44156_00833 (ligA)
03430 Mismatch repair
MAA44156_00833 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mavm03032
]
MAA44156_00833 (ligA)
03400 DNA repair and recombination proteins [BR:
mavm03400
]
MAA44156_00833 (ligA)
Enzymes [BR:
mavm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MAA44156_00833 (ligA)
DNA replication proteins [BR:
mavm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MAA44156_00833 (ligA)
DNA repair and recombination proteins [BR:
mavm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MAA44156_00833 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MAA44156_00833 (ligA)
MMR (mismatch excision repair)
DNA ligase
MAA44156_00833 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MAA44156_00833 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Auto_anti-p27
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QGW31086
LinkDB
All DBs
Position
822137..824218
Genome browser
AA seq
693 aa
AA seq
DB search
MSSAEADSVPPEVRRQWQELAETVREHQFRYYIKDAPIISDAEFDALFNELLALEERHPE
LRVADSPTQLVGGAGFATDFAEAAHLERMLSLDDVFDTDELIAWSNRVENEIGKDPHYLC
ELKIDGVALSLVYRDGRLERAATRGDGRVGEDVTLNARTIDDVPERLSPSDDFPVPALLE
VRGEVFFLLADFEALNASLVEDGKAPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGR
TEGFSPKTQHEAYTALSVWGLPVAEQTARVRGLAAVQERIGYWGEHRYELQHEIDGVVVK
VDDVALQRRLGATSRAPRWAVAYKYPPQEAQTKLLDIRVNVGRTGRVTPFAFMTPVKVAG
STVGLATLHNAAEVKRKGVLIGDTVMIRKAGDVIPEVLGPVVDLRDGTEREFVMPTTCPE
CGTPLAPAKEGDADIRCPNARSCPAQLRERVFHVAGRGALDIEGLGYEAATALLTAGVIA
DEGDLFALTEDDLLRTELFRTKAGTLSANGTRLLQNLQKAKKVALWRVLVALSIRHVGPT
AARALATEFGDLDSIMSASTERLAAVEGVGPTIAAALTEWFTVDWHRAIVDKWRAAGVRM
ADERDASVPRTLEGLTVVVTGSLAGFSRDDAKEAILARGGKAAGSVSKKTDYVVAGDSPG
SKYDKAVELGVPILDEDGFRKLLAEGPPETPAD
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcggcagaggctgattcggtaccgcccgaggtgcggcggcagtggcaggagctg
gccgaaacggtccgcgaacaccagttccgctactacatcaaggacgcgccgatcatctcg
gacgccgagttcgacgcgctgttcaacgagctgctcgccctggaggagcgtcaccccgag
ctgcgggtggccgattcgcccacgcagctggtcggcggggcgggtttcgccaccgacttc
gccgaggcggcgcacctggagcggatgctgagcctcgacgacgtcttcgacaccgacgag
ctaatcgcctggagcaatcgcgtcgagaacgagatcggcaaggacccgcactacctgtgc
gagctcaagatcgacggggtggccctgtcgctggtctaccgcgacggccggctggaacgc
gccgccacccggggcgacggccgggtcggcgaggacgtgacgctcaacgcccgcaccatc
gacgacgtgcccgaacgcctctcgcccagcgacgacttcccggttccggcgctgctcgag
gtgcgcggtgaggtgttcttcctgctcgccgacttcgaggcgctcaacgccagcctggtc
gaagacggcaaggcgccgttcgccaatccgcgcaacagcgcggccgggtcgctgcgccag
aagaacccggccgtcaccgcgcggcgcaagctgcggatgatctgccacggcatcggccgc
accgaggggttttcgccgaaaacccagcacgaggcctacaccgcgctgagtgtgtggggg
ctgccggtggccgaacagaccgcgcgggtgcgcgggctggccgcggtgcaggagcggatc
ggctactggggcgagcaccgctacgaactgcaacacgagatcgacggtgtggtggtcaaa
gtcgacgacgtcgcgttgcagcgccggctcggcgccacctcgcgcgcgccgcgctgggcg
gtcgcctacaagtacccgccccaggaggcgcagaccaagctcctcgacatccgcgtcaac
gtcgggcgcaccgggcgcgtcaccccgtttgcgttcatgaccccggtcaaggtggccggg
tcgacggttgggctggccaccctgcacaacgccgccgaggtcaagcgcaagggcgtgctg
atcggcgacaccgtgatgatccgcaaggccggcgacgtgatccccgaggtgctgggcccg
gtcgtcgacctgcgcgacggcaccgaacgcgaattcgtcatgcccacaacgtgtcccgag
tgcggcaccccgctggcgccggccaaggagggcgacgccgacatccgctgccccaacgcc
cggtcctgcccggcgcagctgcgagagcgggtgtttcacgtcgccggccgcggcgcactc
gacatcgaggggctgggctacgaggcggccaccgcgctgctcacggccggggtgatcgcc
gacgagggcgacttgttcgcgctcaccgaggacgacctgctgcgcaccgagctgttccgg
accaaggccggcacgttgtccgcgaacggcacacggctgctgcagaacctgcagaaggcg
aaaaaggttgcgctgtggcgtgttttggtggcgttgtcgatccggcacgtggggccgacg
gcggcgcgcgccctggcgaccgagttcggcgatctggactcgatcatgtcggcgtccacc
gagcggctcgccgcggtggagggggtcggcccgacgatcgcggcggcgctcaccgaatgg
ttcaccgtcgactggcaccgcgcgatcgtggacaagtggcgggccgccggcgtgcggatg
gccgacgagcgcgacgccagcgtgccgcgcacgctggaggggctgacggtggtggtcacc
gggtcgctggccggtttctcccgcgacgacgccaaggaggcgatcctggcgcgcggcggc
aaggccgccggttcggtgtcgaagaagaccgactacgtggtggccggcgattcgccgggc
tccaagtacgacaaggcggtcgagctcggcgtgcccatcctggacgaggacggcttccgc
aagctgctggccgagggcccgccggaaaccccggcggactga
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